Pairwise Alignments

Query, 510 a.a., Proton-translocating NADH-quinone oxidoreductase, chain M (NCBI) from Rhodospirillum rubrum S1H

Subject, 492 a.a., NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) from Variovorax sp. SCN45

 Score =  503 bits (1295), Expect = e-147
 Identities = 246/484 (50%), Positives = 349/484 (72%), Gaps = 7/484 (1%)

Query: 6   LLSIITFLPLV-GAVFILTVKGEEAVVARNARNVALLTTGFTFLVSLGLWFGFDPAQSGF 64
           LLS+  ++P+  GAV +   + E A   +  R VAL+    +FLV++ L+  F    +  
Sbjct: 3   LLSLAIWVPIAFGAVLLAFGRDEHA---KGVRWVALVGAIVSFLVTVPLFTRFQNGTAAM 59

Query: 65  QFVEKVSWLPDYGINYQMGVDGISVLFVLLSTFLTPLCILASWTSITKRVKEYMVAFLVL 124
           QFVEK SW+  + +NY +GVDG+S+  VLL++F+T + ++++W  IT+RV +YM AFL+L
Sbjct: 60  QFVEKTSWISRFNVNYHLGVDGLSLWLVLLTSFITVIVVISAWEVITERVNQYMGAFLIL 119

Query: 125 ETMMVGMFCALDFVVFYVFFEGVLIPMFLIIGIWGGGRRVYASFKFFLYTLAGSVLMMVA 184
              M+G+F ALD V+FYVFFE  LIPM+LIIGIWGG  ++YA+FKFFLYTL GS+LM+VA
Sbjct: 120 SGFMIGVFSALDGVLFYVFFEATLIPMYLIIGIWGGPNKIYAAFKFFLYTLLGSLLMLVA 179

Query: 185 MLAMYIEAGTTDIPTLMSHGFP--AAMQTWLWLAMFASFAVKVPMWPVHTWLPDAHVEAP 242
           ++ +Y ++G +    L  H  P  +  QT+L+ A FA+FAVKVPMWPVHTWLPD HVEAP
Sbjct: 180 LIFLYNKSGGS-FDILAWHKLPLGSTAQTFLFFAFFAAFAVKVPMWPVHTWLPDVHVEAP 238

Query: 243 TAGSVILAGVLLKMGAYGFLRFSIPMLPLASADFAPFIFALSVIGVIYTSLVALVQEDMK 302
           T GS +LA ++LK+GAYGFLRFS+P+ P AS ++A  + ALS+I VIY  LVALVQ+DMK
Sbjct: 239 TGGSAVLAAIMLKLGAYGFLRFSMPIAPDASHEWAWLMIALSLIAVIYVGLVALVQQDMK 298

Query: 303 KLIAYSSIAHMAFVTAGIFAVNQMSVEGALYQMLSHGVVSGALFLCVGVVYDRLHTREIS 362
           KL+AYSS+AHM FVT G F  N++ V G + QM++HG VSGA+FL +GV+YDR+H+R+I+
Sbjct: 299 KLVAYSSVAHMGFVTLGFFIFNELGVSGGIVQMIAHGFVSGAMFLGIGVLYDRVHSRQIA 358

Query: 363 RYGGLAKNMPRYALVFMVFMMASIGLPGTGGFIGEFLIMMGVFQISTWVALFIATGVILG 422
            YGG+   MP++A   ++F MA+ GLPGT GF+GE+++++G  + + W+ L  AT +I G
Sbjct: 359 DYGGVVNTMPKFAAFALLFAMANCGLPGTAGFVGEWMVILGAVKANFWIGLGAATALIFG 418

Query: 423 AAYMLYLYRRVIFGKLEKEDLKGLLDLNRREVAIFAPLLVLVLWMGVYPSTFLDFMHTSV 482
           AAY L++Y+RV  G +  + +K L D+N RE  + + L + VLWMG+YP  F D M  SV
Sbjct: 419 AAYTLWMYKRVYLGPVGNDHVKELKDINAREFLMLSLLAIAVLWMGLYPKPFTDAMDASV 478

Query: 483 ADLV 486
            +L+
Sbjct: 479 TELL 482