Pairwise Alignments

Query, 510 a.a., Proton-translocating NADH-quinone oxidoreductase, chain M (NCBI) from Rhodospirillum rubrum S1H

Subject, 509 a.a., NADH-ubiquinone oxidoreductase chain M (EC 1.6.5.3) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  340 bits (872), Expect = 7e-98
 Identities = 186/511 (36%), Positives = 302/511 (59%), Gaps = 29/511 (5%)

Query: 6   LLSIITFLPLVGAVFILTVKGEEAVVARNARNVALLTTGFTFLVSLGLWF--GFDPAQSG 63
           LL  +  +P +G          E    +  R +AL+T G T  + L LW   G+   QS 
Sbjct: 2   LLPWLILIPFIGGFLCWQT---ERFGVKVPRWIALITMGLTLALGLQLWLQGGYSLTQSA 58

Query: 64  ----FQFVEKVSWLPDYGINYQMGVDGISVLFVLLSTFLTPLCILASWTSITKRVKEYMV 119
               +Q    + W+P +GI+  + +DG+S+L V+L+  L  L +L SW  I K    + +
Sbjct: 59  GIPQWQSEFVLPWIPRFGISIHLALDGLSLLMVVLTGLLGVLAVLCSWREIEKYQGFFHL 118

Query: 120 AFLVLETMMVGMFCALDFVVFYVFFEGVLIPMFLIIGIWG-----GGRRVYASFKFFLYT 174
             + +   ++G+F A+D  +F+ F+E +L+PM+ +I +WG     G  R+ A+ KFF+YT
Sbjct: 119 NLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYT 178

Query: 175 LAGSVLMMVAMLAM-YIEAGTTDIPTL---------MSHGFPAAMQTWLWLAMFASFAVK 224
            A  ++M++A+LA+ ++    T + T          MSHG    ++  L L  F +FAVK
Sbjct: 179 QASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSHG----VEYLLMLGFFIAFAVK 234

Query: 225 VPMWPVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFLRFSIPMLPLASADFAPFIFALS 284
           +P+ P+H WLPDAH +APTAGSV LAG+LLK  AYG LRFS+P+ P ASA+FAP    L 
Sbjct: 235 MPVVPLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLG 294

Query: 285 VIGVIYTSLVALVQEDMKKLIAYSSIAHMAFVTAGIFAVNQMSVEGALYQMLSHGVVSGA 344
           VIG+ Y + +A  Q D+K+LIAY+S++HM FV   I+  +Q++ +GA+ QM++HG+ +  
Sbjct: 295 VIGIFYGAWMAFTQYDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAG 354

Query: 345 LFLCVGVVYDRLHTREISRYGGLAKNMPRYALVFMVFMMASIGLPGTGGFIGEFLIMMGV 404
           LF+  G +Y+RLHTR++   GGL   M     + M F +A++G+PGTG F+GEF+I+ G 
Sbjct: 355 LFILCGQLYERLHTRDMRMMGGLWGKMKWLPALSMFFAVATLGMPGTGNFVGEFMILFGS 414

Query: 405 FQISTWVALFIATGVILGAAYMLYLYRRVIFGKLEKEDLK-GLLDLNRREVAIFAPLLVL 463
           +Q+   + +    G++  + Y L +  R  FGK + +     L  ++ RE+ I   L+VL
Sbjct: 415 YQVVPVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASVELPGMSLRELFIILLLVVL 474

Query: 464 VLWMGVYPSTFLDFMHTSVADLVSTYETALT 494
           ++ +G YP   LD  H++++++   +  ++T
Sbjct: 475 LVLLGFYPQPILDTSHSAMSNIQQWFVNSVT 505