Pairwise Alignments

Query, 510 a.a., Proton-translocating NADH-quinone oxidoreductase, chain M (NCBI) from Rhodospirillum rubrum S1H

Subject, 506 a.a., NADH-quinone oxidoreductase subunit M from Erwinia tracheiphila SCR3

 Score =  344 bits (883), Expect = 4e-99
 Identities = 186/506 (36%), Positives = 304/506 (60%), Gaps = 22/506 (4%)

Query: 6   LLSIITFLPLVGAVFILTVKGEEAVVARNARNVALLTTGFTFLVSLGLWF--GFDPAQSG 63
           LL  +  +P +G +        E   ++  R +AL+  G T  +SL LW   G+   Q+ 
Sbjct: 2   LLPWLILIPFIGGLLCWQF---ERFGSKVPRWIALIAMGLTLALSLQLWLQGGYSLTQAA 58

Query: 64  ----FQFVEKVSWLPDYGINYQMGVDGISVLFVLLSTFLTPLCILASWTSITKRVKEYMV 119
               +Q    VSW+P +GIN  + +DG+S+L V+L+  L  + IL SW  I K    + +
Sbjct: 59  GGPKWQSEYLVSWIPRFGINVHLALDGLSLLMVVLTGLLGVMAILCSWNEIEKWQGFFHL 118

Query: 120 AFLVLETMMVGMFCALDFVVFYVFFEGVLIPMFLIIGIWG-----GGRRVYASFKFFLYT 174
             L +   ++G+F A+D  +F+ F+E +L+PM+ +I +WG     G  R+ A+ KFF+YT
Sbjct: 119 NLLWILGGVIGVFLAIDLFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYT 178

Query: 175 LAGSVLMMVAMLAM-YIEAGTTDIPT-----LMSHGFPAAMQTWLWLAMFASFAVKVPMW 228
            A  ++M++A+LA+ ++    TD+ T     L+       M+  L L  F +FAVK+P+ 
Sbjct: 179 QASGLVMLIAILALVFVNYNATDVWTFNYEDLLKTPMSHTMEYLLMLGFFIAFAVKMPVV 238

Query: 229 PVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFLRFSIPMLPLASADFAPFIFALSVIGV 288
           P+H WLPDAH +APTAGSV LAG+LLK  AYG LRF++P+ P ASA+FAP    L +IG+
Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFALPLFPHASAEFAPIAMWLGIIGI 298

Query: 289 IYTSLVALVQEDMKKLIAYSSIAHMAFVTAGIFAVNQMSVEGALYQMLSHGVVSGALFLC 348
            Y + +A  Q D+K+LIAY+SI+HM FV   I+  +Q++ +GA+ QM++HG+ + ALF+ 
Sbjct: 299 FYGAWMAFSQYDIKRLIAYTSISHMGFVLIAIYTGSQLAFQGAVVQMVAHGLSAAALFIL 358

Query: 349 VGVVYDRLHTREISRYGGLAKNMPRYALVFMVFMMASIGLPGTGGFIGEFLIMMGVFQIS 408
            G +Y+RLHTR++ + GGL   +     + + F +A++G+PGTG F+GEF+I+ G FQ  
Sbjct: 359 CGQLYERLHTRDMRQMGGLWSRIKWLPALSLFFAVANLGMPGTGNFVGEFMILTGSFQSV 418

Query: 409 TWVALFIATGVILGAAYMLYLYRRVIFGKLEKEDLKGLLDLNRREVAIFAPLLVLVLWMG 468
             + +    G++  + Y L + +R  +G  + E    L  ++ RE  I   L+VL++ +G
Sbjct: 419 PAIIVTATFGLVFASVYSLVMMQRAYYGVPKSE--TSLRAMSPREFLIIMVLVVLLVLLG 476

Query: 469 VYPSTFLDFMHTSVADLVSTYETALT 494
           +YP   LD  H +++++   Y  +++
Sbjct: 477 IYPQPILDTSHAAMSNIQQWYTASIS 502