Pairwise Alignments

Query, 510 a.a., Proton-translocating NADH-quinone oxidoreductase, chain M (NCBI) from Rhodospirillum rubrum S1H

Subject, 509 a.a., NADH-quinone oxidoreductase subunit M from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  342 bits (878), Expect = 1e-98
 Identities = 182/507 (35%), Positives = 303/507 (59%), Gaps = 21/507 (4%)

Query: 6   LLSIITFLPLVGAVFILTVKGEEAVVARNARNVALLTTGFTFLVSLGLWF--GFDPAQSG 63
           LL  +  +P +G          E    +  R +AL+T G T  +SL LW   G+   QS 
Sbjct: 2   LLPWLILIPFIGGFLCWQT---ERFGVKVPRWIALITMGLTLALSLQLWLQGGYSLTQSA 58

Query: 64  ----FQFVEKVSWLPDYGINYQMGVDGISVLFVLLSTFLTPLCILASWTSITKRVKEYMV 119
               +Q    + W+P +GI+  + +DG+S+L V+L+  L  L +L SW  I K    + +
Sbjct: 59  GIPQWQSEFDMPWIPRFGISIHLAIDGLSLLMVVLTGLLGVLAVLCSWKEIEKYQGFFHL 118

Query: 120 AFLVLETMMVGMFCALDFVVFYVFFEGVLIPMFLIIGIWG-----GGRRVYASFKFFLYT 174
             + +   ++G+F A+D  +F+ F+E +L+PM+ +I +WG     G  R+ A+ KFF+YT
Sbjct: 119 NLMWILGGVIGVFLAIDMFLFFFFWEMMLVPMYFLIALWGHKASDGKTRITAATKFFIYT 178

Query: 175 LAGSVLMMVAMLAM-YIEAGTTDIPT-----LMSHGFPAAMQTWLWLAMFASFAVKVPMW 228
            A  ++M++A+LA+ ++    T + T     L++    + ++  L L  F +FAVK+P+ 
Sbjct: 179 QASGLVMLIAILALVFVHYNATGVWTFNYEELLNTPMSSGVEYLLMLGFFIAFAVKMPVV 238

Query: 229 PVHTWLPDAHVEAPTAGSVILAGVLLKMGAYGFLRFSIPMLPLASADFAPFIFALSVIGV 288
           P+H WLPDAH +APTAGSV LAG+LLK  AYG LRFS+P+ P ASA+FAP    L VIG+
Sbjct: 239 PLHGWLPDAHSQAPTAGSVDLAGILLKTAAYGLLRFSLPLFPNASAEFAPIAMWLGVIGI 298

Query: 289 IYTSLVALVQEDMKKLIAYSSIAHMAFVTAGIFAVNQMSVEGALYQMLSHGVVSGALFLC 348
            Y + +A  Q D+K+LIAY+S++HM FV   I+  +Q++ +GA+ QM++HG+ +  LF+ 
Sbjct: 299 FYGAWMAFAQTDIKRLIAYTSVSHMGFVLIAIYTGSQLAYQGAVIQMIAHGLSAAGLFIL 358

Query: 349 VGVVYDRLHTREISRYGGLAKNMPRYALVFMVFMMASIGLPGTGGFIGEFLIMMGVFQIS 408
            G +Y+R+HTR++   GGL   M     + + F +A++G+PGTG F+GEF+I+ G FQ+ 
Sbjct: 359 CGQLYERIHTRDMRMMGGLWSKMKWLPALSLFFAVATLGMPGTGNFVGEFMILFGSFQVV 418

Query: 409 TWVALFIATGVILGAAYMLYLYRRVIFGKLEKE-DLKGLLDLNRREVAIFAPLLVLVLWM 467
             + +    G++  + Y L +  R  FGK + +   + L  ++ RE+ +   L+VL++ +
Sbjct: 419 PVITVISTFGLVFASVYSLAMLHRAYFGKAKSQIASQELPGMSLRELFMILLLVVLLVLL 478

Query: 468 GVYPSTFLDFMHTSVADLVSTYETALT 494
           G YP   LD  H+++ ++   +  ++T
Sbjct: 479 GFYPQPILDTSHSAIGNIQQWFVNSVT 505