Pairwise Alignments

Query, 1483 a.a., Signal Transduction Histidine Kinase (STHK) with CheB and CheR activity (NCBI) from Rhodospirillum rubrum S1H

Subject, 632 a.a., putative hybrid sensor and regulator, histidine kinase from Pseudomonas putida KT2440

 Score =  230 bits (587), Expect = 3e-64
 Identities = 180/632 (28%), Positives = 295/632 (46%), Gaps = 81/632 (12%)

Query: 686  SELRGAIRNLEISSEEQKAINEEALSVSEE--------YQATNEELLAS---KEELQSLN 734
            +EL+  +  L+  + + + IN+  +   E         Y A    ++ +   +E   +LN
Sbjct: 10   AELQAELTRLQHQNHKLQRINDALIERIESGVTRGNDPYAAFQHSVVLAEQVRERTDALN 69

Query: 735  E---ELTALNGQLHETLERQRTT-SNDLQNVLYSTDVATLFLDTALNIRFFTPATKLLFR 790
            +   EL A+N  L E  +R  T   + ++ +  +      +L+  L   F     +  + 
Sbjct: 70   QAMAELKAVNRLLSEARQRAETAHQHQIRLITDNVPALIAYLNADLVYEFTNKVYEEWYC 129

Query: 791  VIPGD-IGRPLADLSPLVADDALLGDAAKVLK----TMTPIEREIEARSGSWYLRRILPY 845
               G  +G+ L +         L G  A+ L     T    E  I  +   + LR  +P 
Sbjct: 130  WPHGVMLGQSLREAHSEQHYQRLEGYVARALAGESVTFEFAETNINGQE-RYMLRSYVPN 188

Query: 846  RTQDNGVEGVVITFADITERRWAADA---------------------------REV---- 874
            R     V G+ +   DITERR  A A                           RE+    
Sbjct: 189  RLASGEVVGIFVLIRDITERRNTAQALHQAYQHLEQRVRERTAELTSLNDQLLREIEERS 248

Query: 875  --------AKRQAQIANMAKSRFLAVASHDLRQPLQTLTLLQGLLAKKVEGVQSRVLLAR 926
                    AKR+A+ AN++K++FLA  SHDL QPL    L    L ++ E   +  L+  
Sbjct: 249  QAESRLREAKREAEQANLSKTKFLAAVSHDLLQPLNAARLFTSALLERDEPQNAAHLVRN 308

Query: 927  MDETLGAMSSMLNVLLDINQIEVGTVEAERVVFPINDLFDRVREELAYQARAKKLDWSVV 986
            +  +L  + ++L  L+DI++++ G ++A+   F +++L D +  E    AR++ L+   V
Sbjct: 309  VSNSLEDVENLLGTLVDISKLDAGVIKADVAPFALHELMDNLAAEYVQVARSEGLELHFV 368

Query: 987  SCGLSVTSDPRLLEQMIRNLLANALKYTKQGKVLLGCRRRSGSLSIEVWDSGIGIPPGEL 1046
             C   V SD +LL +++RNLL+NA++YT  G+V+LGCRR  G + IEVWDSGIGI    L
Sbjct: 369  GCSAVVRSDIQLLARILRNLLSNAIRYTPSGRVVLGCRRLRGGVRIEVWDSGIGIAEEHL 428

Query: 1047 EAIFDEFHQVETPAQGQGRGLGLGLSIVRRLGDLLGHPIGVRSRLGKGSVFTINVAIAPA 1106
            + +F EF + +     Q RGLGLGL+IV ++  +LGH I VRS LGKGSVF + V ++  
Sbjct: 429  QDMFLEFKRGDVQRPDQDRGLGLGLAIVEKIAGILGHRIRVRSWLGKGSVFAVEVPLSTT 488

Query: 1107 AAE--------KPSLPARRGAAEVKVDADGQRTGEILIIEDDPDVRDLLDLLLKGEGHRT 1158
            A +        +P L   RGA              + ++++D  +   +  LL+G G R 
Sbjct: 489  APKAQPSQVICEPMLERLRGA-------------RVWVLDNDAAICAGMRTLLEGWGCRV 535

Query: 1159 VAVAEGGQAVALAEGGSIRPDLILADYNLPNGVNGLGVSATLRDVLDRPIPVVILTGDIS 1218
            V            +      DL++ADY+L N  NG+   A +     +P+P +++T + S
Sbjct: 536  VTALSEEDLARQVDNYHADADLLIADYHLDNDCNGVDAVARINARRAQPLPALMITVNYS 595

Query: 1219 TRTLHDIARHRCVKLNKPVKPGELTQTIARLL 1250
                  I       ++KPV+P +L   ++ LL
Sbjct: 596  NDLKQQIRELGHTLMHKPVRPMKLKTAMSHLL 627



 Score = 30.8 bits (68), Expect = 5e-04
 Identities = 32/118 (27%), Positives = 58/118 (49%), Gaps = 4/118 (3%)

Query: 1277 IYLVDDDASLRDSLRALLEDDGLKVEDYESSEAFLAAYRPGGGEACLLI-DAYLPG-MSG 1334
            ++++D+DA++   +R LLE  G +V    S E           +A LLI D +L    +G
Sbjct: 511  VWVLDNDAAICAGMRTLLEGWGCRVVTALSEEDLARQVDNYHADADLLIADYHLDNDCNG 570

Query: 1335 LDLLERLK-KENRLLPAIVITGYSEVAMAVQAMKAGASDFIEKPVGRTELLISIDRAL 1391
            +D + R+  +  + LPA++IT      +  Q  + G +  + KPV   +L  ++   L
Sbjct: 571  VDAVARINARRAQPLPALMITVNYSNDLKQQIRELGHT-LMHKPVRPMKLKTAMSHLL 627