Pairwise Alignments

Query, 361 a.a., NADH dehydrogenase (ubiquinone) (NCBI) from Rhodospirillum rubrum S1H

Subject, 593 a.a., NADH-quinone oxidoreductase subunit C/D from Pseudomonas putida KT2440

 Score =  160 bits (404), Expect = 1e-43
 Identities = 107/383 (27%), Positives = 181/383 (47%), Gaps = 32/383 (8%)

Query: 8   VGPLHVALEEPMYFRIEVDGEKVVSVDITAGHVHRGIEYLATKRNIYQNIVLTERVCSLC 67
           +GP H +        +++DGE++V      G+ HRG E +A +++ +  I  T+R+  L 
Sbjct: 214 LGPNHPSAHGAFRIVLQLDGEEIVDCVPDIGYHHRGAEKMAERQSWHSFIPYTDRIDYLG 273

Query: 68  SNSHPQTYCMALESITGMVVPPRAQYLRVIADETKRVASHMFNVAILAHIVGFDSLFMHV 127
              +   Y +A+E + G+ VP +   +R++  E  R+ SH+  +      VG  +     
Sbjct: 274 GVMNNLPYVLAVEKLAGIKVPQKVDVIRIMLAEFFRITSHLLFLGTYIQDVGAMTPVFFT 333

Query: 128 MEAREIMQDTKEAVFGNRMDIAAMAIGGVKYDLDKDGRDYFIGQLDKLEPTLRDEIIPLY 187
              R+      EA+ G R+  A   IGGV +DL + G D  +    +  P   DE     
Sbjct: 334 FTDRQRAYTVIEAITGFRLHPAWYRIGGVAHDLPR-GWDKLVKDFVEWLPKRLDEYTKAA 392

Query: 188 QTNPSIVDRTRGIGVLSAADCVDYGLMGPVARGSGHAYDVRKQAPYAVYDRLDFEMALGE 247
             N  +  RT G+   +  + +++G  G   R +G  +D+RK  PY+ Y+  +FE+ L  
Sbjct: 393 LQNSILKGRTIGVAAYNTKEALEWGTTGAGLRATGCNFDLRKARPYSGYENFEFEVPLAH 452

Query: 248 HGDVWSRAMVRWQEALTSIGLIRQCLRDMPDGPTKA------------------------ 283
           +GD + R MVR +E   SI +I QCLR+MP+GP KA                        
Sbjct: 453 NGDAYDRCMVRVEEMRQSIRIIDQCLRNMPEGPYKADHPLTTPPPKERTLQHIETLITHF 512

Query: 284 -----GPVPPIPAGEAVAKTEAPRGELIYYLKTNGTDRPERLKWRVPTYMNWDALNVMMA 338
                GPV  +PA E+    EA +G   YYL ++G     R + R P+Y +   +  ++ 
Sbjct: 513 LQVSWGPV--MPANESFQMIEATKGINSYYLTSDGGTMSYRTRIRTPSYPHLQQIPSVIK 570

Query: 339 GARISDIPLIVNSIDPCISCTER 361
           G+ ++D+   + SID  ++  +R
Sbjct: 571 GSMVADLIAYLGSIDFVMADVDR 593