Pairwise Alignments

Query, 330 a.a., Phage integrase (NCBI) from Rhodospirillum rubrum S1H

Subject, 300 a.a., Site-specific tyrosine recombinase XerC from Sphingobium sp. HT1-2

 Score =  233 bits (595), Expect = 3e-66
 Identities = 125/292 (42%), Positives = 178/292 (60%), Gaps = 4/292 (1%)

Query: 38  WLGWLQGERRASRHTLDAYGRDLAAFLTFLRDYRGEEPGLATLASLGPADFRAYMAARLT 97
           W   L  +RR S HT+ AY       + FL +++G+    A+LA L  AD RAY+A+R  
Sbjct: 13  WRQHLSLDRRRSAHTVRAYVATAERLVAFLAEHQGQAVTAASLARLEQADLRAYLASRRV 72

Query: 98  QGLSRPSMARALSTLRNLFRWLDREGVLRNGAIATIRSPRQPQAVPKALSESEALDALSV 157
            G+   S AR LS +R   +++          +  ++ PR  + +P+ +S  EAL     
Sbjct: 73  DGIGNISAARELSAVRGFLKFVGGA----EARVPQLKGPRVKRGLPRPISPDEALALAGD 128

Query: 158 ASDLQDDPWLAKRDLALFTLLYGCGLRLGEALDLDRGDLPSGEVMRITGKGRKERLVPLL 217
            ++   + W+  RD A+  LLYG GLR+GEA+ L    +P G+ +R+TGK  K RLVPLL
Sbjct: 129 VAEGAREDWIGARDWAVLLLLYGAGLRIGEAMGLMGDIMPLGDTLRVTGKRGKTRLVPLL 188

Query: 218 PVVVEALADYLAACPFAGGPDDPLFLGSRGKRLNPGVVQRQMRRLRGFLGLPETATPHAL 277
           P V  A+  Y   CP++   D PLF G+RG  L+  +++R ++  RG LGL +  TPHAL
Sbjct: 189 PQVRSAIEAYADQCPWSPERDQPLFRGARGGPLSAALIRRSVQGARGRLGLSDRTTPHAL 248

Query: 278 RHSFATHLLAQGGDLRTIQELLGHASLSTTQRYTKVDAGTLVGLHGATHPRA 329
           RHSFATHLL +G DLR++QELLGHASL++TQ YT+VDA  L+ ++ A HPRA
Sbjct: 249 RHSFATHLLGRGADLRSLQELLGHASLTSTQVYTQVDAAHLLDVYRAAHPRA 300