Pairwise Alignments

Query, 445 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

Subject, 1204 a.a., hypothetical protein from Magnetospirillum magneticum AMB-1

 Score =  133 bits (335), Expect = 3e-35
 Identities = 134/446 (30%), Positives = 187/446 (41%), Gaps = 37/446 (8%)

Query: 14  LTRAGAAMAAGEIDQAAAHLQAAAQLCPDEPMIWALLGEVLLLLDRPQDGLGALDRALAL 73
           L  A A    G+ D+A A +       PD   +W  LG +L   +R       L RAL +
Sbjct: 93  LELAEALRQIGQPDEAHAIIDILLMERPDSVQVWCGLGRLLNDENRLAGAELTLRRALGV 152

Query: 74  APEDPRPRFHRARAFERLDRLAEALADQEAL-----AILCANKAEVWHNLGL---LRRAG 125
            P           A+  L R+     + EA      A +     +  H +GL   L  A 
Sbjct: 153 DPG-------YGPAWAALGRILARRGEGEAAVDAFHAAITLEPEQPAHQVGLAEVLLEAH 205

Query: 126 GDPSGAEAAFGRALALEPSRAESALALAHSLLGRAAWAEGFAHYEARLSLPGWQRPAPLP 185
                AE    RALAL+   A + +A A   +      E +     R  LPG  RP  LP
Sbjct: 206 RTDEAAEH-INRALALDDECAAAHMARARLAMLEGRQKESWEEALWRHRLPGVVRPL-LP 263

Query: 186 GRRWRGEDPAGRTLLVSAEQGLGDGVQFLRYLPLI-KGAGKVIVECHPPLRRLIAAQPGV 244
              W GED  G  LL+ AE  L   +   R++P++ +    + V   P L  L+ AQPG+
Sbjct: 264 AAPWEGEDLQGAHLLLHAESELSVTLMMARFIPILAQRCTAITVLAQPGLVPLLEAQPGI 323

Query: 245 DATIAFGEAIPDLGAEGLTIPLASLALPLAGGAPLGERIPYVSKPRLR------PQGDRP 298
              +  G+ +PD  +      L  +AL L          PY+S PR R      P G   
Sbjct: 324 TRVLPLGKPLPDDLSADYAASLDDVALLLGIEPQSLPTRPYLSAPRPRIRRIRVPVGTLV 383

Query: 299 RIGLAWRSSDRAELRRDPPLAALAALAAIPAVDWVSLQFAPTDY-------PALPLDLRP 351
           ++G+AW   +R+E     P   +  L+ +P     SL+  P          P L  DL P
Sbjct: 384 KVGIAW-GGERSEDGLSFP--HVLDLSTLPGTLLFSLETGPRAAEARQQADPGLITDLSP 440

Query: 352 MASVDDLDDTAALIADLDLVISVDTAVAHLAGAMGKPLWVLLGPRADWRWTASAQSSPWY 411
             ++ D  D A  IA++DLVI+ D   AHLA AMGKP+ +LL   A  RW      SPWY
Sbjct: 441 --TIADYADLAGRIAEMDLVIAADGPAAHLAAAMGKPVLLLLPHAAHPRWMRDRDDSPWY 498

Query: 412 PSCVPFFHGAEG-WPGVIAAVSERLK 436
           P        A G W   +A    R++
Sbjct: 499 PGMALLRQPAPGQWGPPVAEARRRME 524



 Score =  129 bits (325), Expect = 4e-34
 Identities = 132/448 (29%), Positives = 181/448 (40%), Gaps = 28/448 (6%)

Query: 5    AVADRTIEGLTRAGAAMAAGEIDQAAAHLQAAAQLCPDEPMIWALLGEVLLLLDRPQDGL 64
            A A R +       A  A G+I++AA     A  + P   M  A L  +  L  +P   +
Sbjct: 762  AEAGRAMALAAPGPALQAKGQINEAADLYAQALAIDPFCAMANANLAVLQHLAGKPDAAI 821

Query: 65   GALDRALALAPEDPRPRFHRARAFERLDRLAEALADQEALAILCANKAEVWHNLGLLRRA 124
                RAL           + A A  R  RL EA A          +  ++  +L L+RR 
Sbjct: 822  AGFTRALGRLGHSAILA-NLAAALRRAGRLGEAEALLGEARTAGRDTPDILSDLALVRRD 880

Query: 125  GGDPSGAEAAFGRALALEPSRAESALALAHSLLGRAAWAEGFAHYEARLSLPGWQRPAPL 184
             G  S AEA   RA    P R   +  LA  LLG    +EG          PG  R   L
Sbjct: 881  QGRLSEAEALMRRARTQAPDRPGLSWGLAQILLGAGKLSEGLPLLAHHPDPPG--RALHL 938

Query: 185  PGRRWRGEDPAGRTLLVSAEQGLGDGVQFLRYLPLIKGAGKVI-VECHPPLRRLIAAQPG 243
            P  RW G D    ++LV       D +   R+LP++   G ++ V C   +  L+A  PG
Sbjct: 939  P--RWDGGDVVATSVLVEITGHADDALLLARFLPMLAARGALVHVACPDDMVALLADLPG 996

Query: 244  VDATIAFGEAIPD------LGAEGLTIPLASLALPLAGGAPLGERIPYVSKPRLRPQGDR 297
            ++  +   + +P+      L A    + LA  A P   G  L        + R   + +R
Sbjct: 997  IEQVVGEDDPLPECQVRTSLAALPGLLGLADTARPTGSGGYL-----LAGRGRRPVRDNR 1051

Query: 298  PRIGLAWRSSDRAELRRDPPLAALAALAAIPAVDWVSL-------QFAPTDYPALPLDLR 350
             R+GL W    R    R   L  +  LA  PAV  ++L               AL    R
Sbjct: 1052 LRVGLTW-GPGRGTAGRPCTLGDMLGLAIDPAVSLLALVEDEHLGHIQAEGVEALIE--R 1108

Query: 351  PMASVDDLDDTAALIADLDLVISVDTAVAHLAGAMGKPLWVLLGPRADWRWTASAQSSPW 410
            PM     L + AALI+ LD+V+  DT   HLA A+GKP+  LL    DWRW    + SPW
Sbjct: 1109 PMPQPAHLAEMAALISGLDVVVGGDTVQLHLAAALGKPVLALLPHGFDWRWPQGREDSPW 1168

Query: 411  YPSCVPFFHGAEG-WPGVIAAVSERLKA 437
            YP+      G  G W   +  V   L A
Sbjct: 1169 YPTVRVLRAGPSGHWREPLRRVVSALAA 1196