Pairwise Alignments

Query, 559 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 681 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  284 bits (727), Expect = 7e-81
 Identities = 165/366 (45%), Positives = 229/366 (62%), Gaps = 5/366 (1%)

Query: 196 VVMIAAVGLVIA----LSRNIGGGVIRLVKVTERLAARDFSVEIPATDRGDEIGQLAKAV 251
           + +I  +G+  A    L++ I G +  +     RLA  D ++ +   D   E G++A+AV
Sbjct: 314 IAVIGGLGITFAAAGILAKGITGPIAHITNAMSRLATGDTAISVEGVDLPTEEGEMARAV 373

Query: 252 AVLRDGAREADHLRQRQDGLKAEAEAERRRAMLSVADGFEGSVKRVADTIAGAANQLEDA 311
            V R+    A+ L   Q   + EA+  RR+A+  +   F   V      +  A   L ++
Sbjct: 374 QVFRNNHLAAEKLAAEQKA-EQEAKERRRQAIERLTAAFRQEVSGALAAVGDATRLLNNS 432

Query: 312 AKAVSGAVDTASHQATSIAAAAEQASANVATVASAAEELTSSIQEISRQVHQSSTISTNA 371
           A ++  +  +    A ++AAAAE+AS NV TVA AAEEL++SI EISRQV  S+ +S  A
Sbjct: 433 ANSLGSSAQSMEGHAAAVAAAAEEASINVETVAGAAEELSASINEISRQVATSAQVSKQA 492

Query: 372 VKEAQNTNELVMGLAATATRIGDVVKLINDIASQTNLLALNATIEAARAGDAGKGFAVVA 431
           V EA+ TN LV GLA  A  IG+VV +I DIA QTNLLALNATIEAARAG+AGKGFAVVA
Sbjct: 493 VAEAERTNALVHGLADAARNIGEVVTMIGDIAGQTNLLALNATIEAARAGEAGKGFAVVA 552

Query: 432 NEVKSLANQTAKATDDISNQIGAVQSATGQAVDAIRGITGTIAQISEIGETIAAAVEEQG 491
           NEVK LA QTA+AT  I+ Q+GAVQ+AT QAV AI+GI   I +I+E+   IAAAVEEQ 
Sbjct: 553 NEVKHLATQTARATSQITEQVGAVQAATDQAVTAIQGIGAIIERINEVSSAIAAAVEEQD 612

Query: 492 AATLEIARNVQQAAAGTQEVTSTLSQLSAVTAQAGSSAGGMLSDCEAMVAEAKTLRGEVA 551
           A T +IARNV +AA GT+EV+  +S +++   + G +A  +L    A+ +++  L   V 
Sbjct: 613 ATTRDIARNVAEAAGGTREVSRHVSDVTSEAGETGKTATDVLGAVTALGSQSDALNTSVQ 672

Query: 552 GFLSGI 557
            FL+G+
Sbjct: 673 RFLAGV 678



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 16/119 (13%)

Query: 443 KATDDISNQIGAVQSATGQAVDAIRGITGTIAQISEIGETIAAAVEEQGAATLEIARNVQ 502
           + T     ++    +A G A   +     ++   ++  E  AAAV    AA  E + NV+
Sbjct: 406 RLTAAFRQEVSGALAAVGDATRLLNNSANSLGSSAQSMEGHAAAV---AAAAEEASINVE 462

Query: 503 QAAAGTQEVTSTLSQLS---AVTAQAGSSAGGMLSDCEAMVAEAKTLRGEVAGFLSGIR 558
             A   +E++++++++S   A +AQ    A          VAEA+     V G     R
Sbjct: 463 TVAGAAEELSASINEISRQVATSAQVSKQA----------VAEAERTNALVHGLADAAR 511