Pairwise Alignments

Query, 559 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 591 a.a., methyl-accepting chemotaxis protein from Magnetospirillum magneticum AMB-1

 Score =  288 bits (736), Expect = 5e-82
 Identities = 165/367 (44%), Positives = 237/367 (64%), Gaps = 4/367 (1%)

Query: 193 VLGVVMIAAVGLVIALSRNIGGGVIRLVKVTERLAARDFSVEIPATDRGDEIGQLAKAVA 252
           VLG++ + +  LV A++  +GG    +    ERLA  D  V +PA  R DEIG +A AV 
Sbjct: 228 VLGLLALISFLLVRAIASAVGG----MTGAMERLAQGDLGVVVPAIGRRDEIGAMAAAVQ 283

Query: 253 VLRDGAREADHLRQRQDGLKAEAEAERRRAMLSVADGFEGSVKRVADTIAGAANQLEDAA 312
           V +D A+   +L   Q+ L+ +AEA +R+AM  +A   E +V+   +  + AA+ +   A
Sbjct: 284 VFKDNAQRVKNLTDEQEALQRQAEAAKRQAMTDLAGEIETTVRGAVENASRAADSIRGEA 343

Query: 313 KAVSGAVDTASHQATSIAAAAEQASANVATVASAAEELTSSIQEISRQVHQSSTISTNAV 372
           + ++   +TA  Q   +A ++E A+ NV TVA AA  L  SI EI+RQV +SS +++ AV
Sbjct: 344 EVLAANAETAISQTAQVAESSELANGNVETVAQAASRLVGSISEINRQVEESSRVASEAV 403

Query: 373 KEAQNTNELVMGLAATATRIGDVVKLINDIASQTNLLALNATIEAARAGDAGKGFAVVAN 432
            EA  T+E V  L   + +IG+VV LINDIASQTNLLALNATIEAARAGDAGKGFAVVAN
Sbjct: 404 AEAARTDETVKTLTVASGKIGEVVNLINDIASQTNLLALNATIEAARAGDAGKGFAVVAN 463

Query: 433 EVKSLANQTAKATDDISNQIGAVQSATGQAVDAIRGITGTIAQISEIGETIAAAVEEQGA 492
           EVK+LANQTA+AT++I+ +I A+++AT +AV AI GI  TI +++E    I  AV EQG 
Sbjct: 464 EVKNLANQTARATEEITGEITAMKAATEEAVRAIDGIVATIGRVNEALAAITGAVAEQGR 523

Query: 493 ATLEIARNVQQAAAGTQEVTSTLSQLSAVTAQAGSSAGGMLSDCEAMVAEAKTLRGEVAG 552
           AT EI+ +V QAA GT+ V+S + ++  V  Q G++A  +    E +V E   L+ +V G
Sbjct: 524 ATSEISDSVSQAADGTRTVSSGIGEVRRVADQVGNAAATVQVTTETLVGEFDRLQTQVDG 583

Query: 553 FLSGIRA 559
            +  +++
Sbjct: 584 LVVRLKS 590



 Score = 27.7 bits (60), Expect = 0.001
 Identities = 22/94 (23%), Positives = 39/94 (41%), Gaps = 7/94 (7%)

Query: 244 IGQLAKAVAVLRDGAREADHLRQR-QDGLKAEAEAERRRAMLSVADGFEGSVKRVADTIA 302
           IG++ +A+A +     E         D +   A+  R     +V+ G  G V+RVAD + 
Sbjct: 504 IGRVNEALAAITGAVAEQGRATSEISDSVSQAADGTR-----TVSSGI-GEVRRVADQVG 557

Query: 303 GAANQLEDAAKAVSGAVDTASHQATSIAAAAEQA 336
            AA  ++   + + G  D    Q   +    + A
Sbjct: 558 NAAATVQVTTETLVGEFDRLQTQVDGLVVRLKSA 591