Pairwise Alignments

Query, 367 a.a., Secretion protein HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 378 a.a., Multidrug efflux RND membrane fusion protein MexC from Pseudomonas putida KT2440

 Score =  258 bits (658), Expect = 2e-73
 Identities = 154/352 (43%), Positives = 207/352 (58%), Gaps = 15/352 (4%)

Query: 6   VGVMTIEARPLAVMNELPGRIAATRVSEVRAQVSGILQERVFTQGTPVTKGDVLYRIDAR 65
           V ++T+    +A+  ELPGR+   RV+EVRA+V GI+  + F +G  V  GDVL++ID  
Sbjct: 38  VEIVTLAPEQVALAAELPGRVEPMRVAEVRARVPGIVLHKRFEEGADVKAGDVLFQIDPA 97

Query: 66  LFRARVASAEASLARARSTLTNARNQMSRQESLRKSNVTSGAQYEAAVAALEQANADVAF 125
            F+A +A AEA LARA++    A+ ++ R E L K    S   +++A A L  A A V  
Sbjct: 98  PFKAALARAEADLARAQAVQQEAQARVKRYEPLVKIEAVSQQDFDSATAELRSAGAAVRS 157

Query: 126 AQAALDEARINLAYTDVRAPISGIIGAALVTEGALVTADGSQNLALIQQIDPVYADFTQS 185
           AQA +  AR+NL Y  V APISG IG AL TEGALV    +  +A IQQ+DP+Y DFTQS
Sbjct: 158 AQADVQAARLNLGYATVTAPISGRIGRALATEGALVGQGEATLMARIQQLDPIYIDFTQS 217

Query: 186 AQQLLALRRAVNEGKLAFPAPG-EARVELLFDDDSVYSKPGRLLFASASVDATTGQVTLR 244
           A   L LR+A+ +G L+  +    A+VE      + + + G L+F   SVD  TGQV LR
Sbjct: 218 AADALRLRQALKDGALSADSQRLTAQVE-----GTDFQRSGELMFTDVSVDRGTGQVILR 272

Query: 245 AEFPNSDGDLLPGMYVRVRVEQAVHQHAITIPQRAVLRTQDGRAQVYVVSADDTAVAREV 304
             F N+DG LLPGMYVRVR  Q    HAI +PQRAV R  DG+A+V +V+ +  A AR V
Sbjct: 273 GRFDNADGTLLPGMYVRVRTPQGTDNHAILVPQRAVQRGSDGQARV-LVATNGIAEARAV 331

Query: 305 RLGQVQNDEWLVEAGLKAGERVVIDGVQKVVAGGKVAAEPWNPAATNQKSAA 356
           R G +Q   W +  GL+ G++V++        G      P  P A  QK  A
Sbjct: 332 RTGVMQGSRWQITEGLEPGDQVIV--------GSPAGLAPGMPVAPAQKQTA 375