Pairwise Alignments

Query, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

Subject, 320 a.a., ribosomal large subunit pseudouridine synthase D from Pseudomonas simiae WCS417

 Score =  206 bits (524), Expect = 7e-58
 Identities = 131/308 (42%), Positives = 180/308 (58%), Gaps = 9/308 (2%)

Query: 29  VDAEAAGQRLDKWLATVIPTLSRARLQQLIGEKRVSVNGQTIGEGSRRVKPGQTVRVEEP 88
           V +E  GQRLD+  A +    SR+RL   I + R++V+G  I      V  G  + +   
Sbjct: 11  VPSELGGQRLDQVAAQLFAEHSRSRLSAWIKDGRLTVDGAVIRPRDI-VHGGAILELTAE 69

Query: 89  PPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLAHCGPSLSGI 148
                    + I L +VYEDDD++VI+K AG+VVHP  G+ D TL+NALL H  P +  +
Sbjct: 70  QEAQGEWVAQDIELDIVYEDDDILVINKPAGLVVHPAAGHADGTLLNALLHHV-PDIINV 128

Query: 149 GGERRPGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHSLTREYLCLVWGRPRPAAGSI 208
               R GIVHRLDKDT+GLM+ AKT  A   L  Q    S++R Y C+V G    A G I
Sbjct: 129 ---PRCGIVHRLDKDTTGLMVVAKTIQAQTQLVTQLQSRSVSRIYECIVIG-VVVAGGKI 184

Query: 209 DAPLGRHPTQRKKMAVVSRGGKRALTHYRVVGDVEGIASIVKCTLSTGRTHQVRVHMAHI 268
           +AP+GRH  QR++MAV+  GGK+A++HYRV+       + V+  L TGRTHQ+RVHMAHI
Sbjct: 185 NAPIGRHGQQRQRMAVM-EGGKQAVSHYRVLERFRS-HTHVRVKLETGRTHQIRVHMAHI 242

Query: 269 GHPLLGDAVYGHR-NIPKKLPGDLSERIARLTRQALHSFHLGFLHPRTGESLEFLSELPL 327
             PL+GD  YG R  IP      + + +    RQALH+  L   HP +G+ + + S LP 
Sbjct: 243 NFPLVGDPAYGGRFRIPPAASATMVDSLKNFPRQALHARFLELDHPTSGKRMSWESPLPD 302

Query: 328 DISAVASI 335
           D+  + S+
Sbjct: 303 DLVWLLSL 310