Pairwise Alignments

Query, 343 a.a., Pseudouridine synthase, RluD (NCBI) from Rhodospirillum rubrum S1H

Subject, 340 a.a., ribosomal large subunit pseudouridine synthase, RluD subfamily from Agrobacterium fabrum C58

 Score =  283 bits (724), Expect = 4e-81
 Identities = 161/322 (50%), Positives = 202/322 (62%), Gaps = 17/322 (5%)

Query: 29  VDAEAAGQRLDKWLATVIPT-LSRARLQQLIGEKRVSVNGQTIGEGSRRVKPGQTVRVEE 87
           +  E A  R+D WL   + + LSR+RL+ LI +  V +NGQ + E  ++V PG  V +  
Sbjct: 16  IAGEDAEGRIDVWLVGEVGSDLSRSRLKALIEQGAVLLNGQPVTEPKKKVHPGDRVEIVM 75

Query: 88  PPPIAATPQPEAIALTVVYEDDDLIVIDKAAGMVVHPGPGNPDHTLVNALLAHCGPSLSG 147
           P P    PQ E I L V YED+DLIV+ K AG+VVHPG GN   TLVNAL+ HCG SLSG
Sbjct: 76  PEPEDPVPQGEDIPLDVEYEDEDLIVLVKPAGLVVHPGAGNWTGTLVNALIYHCGDSLSG 135

Query: 148 IGGERRPGIVHRLDKDTSGLMIAAKTDLAHHGLAEQFACHS----LTREYLCLVWGRPRP 203
           IGG +RPGIVHRLDK+TSG+M+ AK D AH  LA QFA H     L R Y  +VWGRPR 
Sbjct: 136 IGGVKRPGIVHRLDKETSGVMVVAKNDNAHRHLAAQFADHGRTGPLERAYKAVVWGRPRT 195

Query: 204 AAGSIDAPLGRHPTQRKKMAVV---SRGGKRALTHYRVV------GDVEGIASIVKCTLS 254
             G++DA LGR  T R K AV    S   + A+THY V+       D   +AS+V+C L 
Sbjct: 196 LRGTVDAALGR-GTDRTKRAVKNEDSFDAREAITHYEVMERFHEKPDASCLASMVECRLE 254

Query: 255 TGRTHQVRVHMAHIGHPLLGDAVYG--HRNIPKKLPGDLSERIARLTRQALHSFHLGFLH 312
           TGRTHQ+RVHMAHIGHPL+GD  YG   R     L       + R  RQALH++ L F H
Sbjct: 255 TGRTHQIRVHMAHIGHPLIGDPEYGAAFRTKANLLDEPARSTVNRFPRQALHAYLLAFEH 314

Query: 313 PRTGESLEFLSELPLDISAVAS 334
           PRTGE +EF +++P D+  + +
Sbjct: 315 PRTGEVMEFETDMPEDMEELVT 336