Pairwise Alignments

Query, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 284 a.a., RNA polymerase sigma 70 from Pseudomonas simiae WCS417

 Score =  206 bits (525), Expect = 4e-58
 Identities = 113/281 (40%), Positives = 166/281 (59%), Gaps = 8/281 (2%)

Query: 3   TVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRLVA 62
           ++ P  ++ P +NL  Y+  +   P+L PE+E  LA+ L    D  AA ++V +HLR V 
Sbjct: 4   SLQPAYALVPGANLEAYVHTVNSIPLLTPEQERELAESLYYEQDLGAARQMVLAHLRFVV 63

Query: 63  KIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWS 122
            IA  Y GYGL   ++I EGNVGLM+AVKRF+PE G RL ++A+ WI+A I E+IL +W 
Sbjct: 64  HIARSYSGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWR 123

Query: 123 LVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRLSS 182
           +VK+ TT AQ+KLFFNLR  K +L  ++  ++H     ++A  LGV  ++V  M  RL+ 
Sbjct: 124 IVKVATTKAQRKLFFNLRSQKKRLAWLNNEEVH-----RVAESLGVEPREVREMESRLTG 178

Query: 183 PDHSLNAPVRMDGDGEWQ---DWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERER 239
            D + +     D D  +Q   ++L D   D    L ++         L  AL+ L++R R
Sbjct: 179 HDMAFDPAAEADDDSAFQSPANYLEDHRYDPARQLEDADWSDNSNHNLHEALEVLDDRSR 238

Query: 240 HILTQRRLRDDPVTLEDLSQHYGISRERVRQIEVRAFEKLQ 280
            IL QR L ++  TL DL+Q Y +S ER+RQ+E  A  KL+
Sbjct: 239 DILYQRWLAEEKATLHDLAQKYNVSAERIRQLEKSAMNKLK 279