Pairwise Alignments

Query, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 284 a.a., RNA polymerase factor sigma-32 from Pseudomonas putida KT2440

 Score =  207 bits (526), Expect = 3e-58
 Identities = 112/281 (39%), Positives = 165/281 (58%), Gaps = 8/281 (2%)

Query: 3   TVAPGLSIGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRLVA 62
           ++ P  ++ P +NL  Y+  +   P+L  E+E  L +RL    D EAA ++V +HLR V 
Sbjct: 4   SLQPAYALVPGANLEAYVHTVNSIPLLTVEQERDLGERLYYEQDVEAARQMVMAHLRFVV 63

Query: 63  KIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWS 122
            IA  Y GYGL   ++I EGNVGLM+AVKRF+PE G RL ++A+ WI+A I E+IL +W 
Sbjct: 64  HIARSYAGYGLAQADLIQEGNVGLMKAVKRFNPEMGVRLVSFAVHWIKAEIHEFILRNWR 123

Query: 123 LVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRLSS 182
           +VK+ TT AQ+KLFFNLR  K +L  ++  ++H     ++A  LGV  ++V  M  RLS 
Sbjct: 124 IVKVATTKAQRKLFFNLRSQKKRLAWLNNDEVH-----RVAESLGVEPREVREMESRLSG 178

Query: 183 PDHSLNAPVRMDGDGEWQD---WLVDESDDQETTLAESQEMGQRRALLSGALKSLNERER 239
            D + +     D D  +Q    +L D   D    L ++       + L  AL+ L+ER R
Sbjct: 179 QDMAFDPAAEADDDSAFQSPAHYLEDHRYDPAVQLEDADWSDNSTSNLHEALQGLDERSR 238

Query: 240 HILTQRRLRDDPVTLEDLSQHYGISRERVRQIEVRAFEKLQ 280
            IL QR L ++  TL +L+  Y +S ER+RQ+E  A  K++
Sbjct: 239 DILYQRWLAEEKATLHELADKYSVSAERIRQLEKNAMNKVK 279