Pairwise Alignments

Query, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 292 a.a., RNA polymerase sigma factor RpoH from Magnetospirillum magneticum AMB-1

 Score =  337 bits (865), Expect = 1e-97
 Identities = 161/271 (59%), Positives = 221/271 (81%), Gaps = 1/271 (0%)

Query: 10  IGPESNLTRYLQNIRKFPMLAPEEEYTLAQRLRDSGDSEAAHRLVTSHLRLVAKIAMGYR 69
           +  +  L +YL++I++FP+LAPEEE+ LA+R  D  D++AAHRLVTSHLRLVAKIA+GYR
Sbjct: 9   VAGDDGLAKYLRDIKEFPVLAPEEEFMLAKRWVDYEDTDAAHRLVTSHLRLVAKIALGYR 68

Query: 70  GYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTT 129
            YGLP+ ++ISEGN+GLM+AVK+F+P+RGFRLATYAMWWI+A++ E++L+SWS+VK+GT 
Sbjct: 69  HYGLPVADLISEGNIGLMRAVKKFEPDRGFRLATYAMWWIKASLNEFVLNSWSMVKIGTL 128

Query: 130 AAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRLSSPDHSLNA 189
           AAQKKLFFNLR++K +L+L++ GD+ P+ V  IA +L V E+DV+ MNRR++  D SLNA
Sbjct: 129 AAQKKLFFNLRRIKSRLRLLEAGDLAPEHVATIARELDVDERDVVAMNRRMAGRDSSLNA 188

Query: 190 PVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRALLSGALKSLNERERHILTQRRLRD 249
           PV  +G  E QD + DE+D+QET   + +E+ + R L++ AL SL ERER +  +RRLRD
Sbjct: 189 PVG-EGGTEIQDLMADEADNQETAYGKREELSKGRVLIARALDSLTEREREVFVERRLRD 247

Query: 250 DPVTLEDLSQHYGISRERVRQIEVRAFEKLQ 280
           DPVTLE+L   YG+SRER+RQIEV+AFEK++
Sbjct: 248 DPVTLEELGGRYGVSRERIRQIEVKAFEKVR 278