Pairwise Alignments

Query, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 679 a.a., RNA polymerase sigma factor RpoD from Magnetospirillum magneticum AMB-1

 Score =  102 bits (255), Expect = 2e-26
 Identities = 76/257 (29%), Positives = 126/257 (49%), Gaps = 18/257 (7%)

Query: 31  PEEEYTLAQRLRDSGDSEAAH---RLVTSHLRLVAKIAMGYRGYGLPMGEVISEGNVGLM 87
           P  EY    +    G+ EA+     ++ ++LRLV  IA  Y   GL   ++I EGN+GLM
Sbjct: 420 PISEYRRIVQTVQRGEREASRAKKEMIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 479

Query: 88  QAVKRFDPERGFRLATYAMWWIRAAIQEYILHSWSLVKMGTTAAQKKLFFNLRKM-KGQL 146
           +AV +F+  RG++ +TYA WWIR AI   I      +++        +   + K+ +   
Sbjct: 480 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPV-----HMIETINKLVRTSR 534

Query: 147 QLMDEGDMHPDKVTQIATKLGVPEQDVINMNRRLSSPDHSLNAPVRMDGDGEWQDWLVDE 206
           Q++ E    P    ++A KL +P + V  + +    P  SL  P+  + D    D++ D+
Sbjct: 535 QMLHEIGREPTP-EELAEKLSMPLEKVRKVLKIAKEP-ISLETPIGDEEDSHLGDFIEDK 592

Query: 207 SDDQETTLAESQEMGQRRALLSGALKSLNERERHILTQR---RLRDDPVTLEDLSQHYGI 263
           +        ++      R   +  L SL  RE  +L  R    +  D  TLE++ Q + +
Sbjct: 593 N---AVLPLDAAIQANLRETTTRVLASLTPREERVLRMRFGIGMNTDH-TLEEVGQQFSV 648

Query: 264 SRERVRQIEVRAFEKLQ 280
           +RER+RQIE +A  KL+
Sbjct: 649 TRERIRQIEAKALRKLK 665