Pairwise Alignments

Query, 299 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 629 a.a., RNA polymerase sigma factor RpoD from Acinetobacter radioresistens SK82

 Score =  103 bits (256), Expect = 1e-26
 Identities = 72/234 (30%), Positives = 117/234 (50%), Gaps = 11/234 (4%)

Query: 49  AAHRLVTSHLRLVAKIAMGYRGYGLPMGEVISEGNVGLMQAVKRFDPERGFRLATYAMWW 108
           A   +V ++LRLV  IA  Y   GL   ++I EGN+GLM+AV +F+  RG++ +TYA WW
Sbjct: 390 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWW 449

Query: 109 IRAAIQEYILHSWSLVKMGTTAAQKKLFFNLRKMKGQLQLMDEGDMHPDKVTQIATKLGV 168
           IR AI   I      +++     +     N    +   QL+ E    P    ++  +L +
Sbjct: 450 IRQAITRSIADQARTIRIPVHMIETINKIN----RVSRQLLQEMGREPTP-EELGERLEM 504

Query: 169 PEQDVINMNRRLSSPDHSLNAPVRMDGDGEWQDWLVDESDDQETTLAESQEMGQRRALLS 228
            E  V  + +    P  S+  P+  D D    D++ D++       A S+ +   +    
Sbjct: 505 DEVKVRKVLKIAKEP-ISMETPIGDDEDSHLGDFIEDQNITSPVDAATSEGL---KEATR 560

Query: 229 GALKSLNERERHILTQRRLRDDPV--TLEDLSQHYGISRERVRQIEVRAFEKLQ 280
             L++L ERE  +L  R   D P   TLE++ + + ++RER+RQIE +A  KL+
Sbjct: 561 EVLENLTEREAKVLKMRFGIDMPTDHTLEEVGKQFDVTRERIRQIEAKALRKLR 614