Pairwise Alignments

Query, 306 a.a., Sigma 32 (RpoH) (NCBI) from Rhodospirillum rubrum S1H

Subject, 334 a.a., RNA polymerase sigma factor from Pseudomonas simiae WCS417

 Score =  141 bits (356), Expect = 2e-38
 Identities = 96/269 (35%), Positives = 153/269 (56%), Gaps = 12/269 (4%)

Query: 20  YLTEIKRFPMLTPEEEFMLAKRLQDEGDRDAAHRLVTSHLRLVAKIAMGYRHYGLPVSDL 79
           YL EI   P+LTPEEE   A RL  +GD     R++ S+LRLV KIA  Y + GL + DL
Sbjct: 66  YLNEIGFSPLLTPEEEVHFA-RLSQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDL 124

Query: 80  VAEGNMGLMKAVKKFEADRGFRLATYAMWWIKASINEYILNSWSLVKVGTVAAQKKLFFN 139
           + EGN+GL++AV+KF+ +RGFR +TYA WWI+ +I   I+N    +++  +   K+L   
Sbjct: 125 IEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMNQTRTIRL-PIHVVKELNVY 183

Query: 140 LRRLKAKLGVYEEGDLSPEDVKTIATQLKVTEADVVMMNRRLAGPDASLNVPVGEDQSMD 199
           LR  + +L    + + SPE++  +  +       ++ +N R++  D SL    G D    
Sbjct: 184 LRAAR-ELTQKLDHEPSPEEIANLLEKPVGEVKRMLGLNERVSSVDVSL----GPDSDKT 238

Query: 200 RMDLLMDEGDNQEEVYAAHEEQSLGNRLLKDALSTLTERERHIITAR-RLRS-EPVTLEE 257
            +D L D  D   +     ++  L ++ +   LS LT+++R ++  R  LR  E  TLE+
Sbjct: 239 LLDTLTD--DRPTDPCELLQDDDL-SQSIDQWLSELTDKQREVVIRRFGLRGHESSTLED 295

Query: 258 LGGEYGVSRERVRQIENRAFEKLQTAVRK 286
           +G E G++RERVRQI+    ++L+  + K
Sbjct: 296 VGLEIGLTRERVRQIQVEGLKRLREILEK 324