Pairwise Alignments

Query, 340 a.a., Lysine-arginine-ornithine-binding periplasmic protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 342 a.a., putative amino-acid ABC transporter-binding protein YhdW from Pseudomonas putida KT2440

 Score =  453 bits (1166), Expect = e-132
 Identities = 218/341 (63%), Positives = 273/341 (80%), Gaps = 3/341 (0%)

Query: 1   MKKMIAALAAFGAAGVIASGSAMAASTLDTVKSRGEVTCGVNNGLPGFALPDDKGHWTGI 60
           +K  +A L A  A G +++  A A +TLD VK +G V CGV++GLPGF++PD +G   GI
Sbjct: 4   LKTTLAVLTAAAALGAVST--AQAGATLDAVKKKGFVQCGVSDGLPGFSVPDAQGKIVGI 61

Query: 61  DVDICRAVAAAVFGDAKKVKFVPLNAKERFTALQSGEIDVLSRNTTWTQTRDASLGLIFA 120
           D D+CRAVAAAVFGDA KVKF  LNAKERFTALQSGE+DVLSRNTTWT +RDA +GL+FA
Sbjct: 62  DADVCRAVAAAVFGDATKVKFSQLNAKERFTALQSGEVDVLSRNTTWTSSRDAGMGLVFA 121

Query: 121 GVNYYDGQGFMVKKELGVSSAKELNGASICIQSGTTTELNLADYFRANAMTYSPVVFDTS 180
           GV YYDG GF+V K+LGVSSAKEL+GA+ICIQ+GTTTELN++D+FRAN + Y+P+ FDTS
Sbjct: 122 GVTYYDGVGFLVNKKLGVSSAKELDGATICIQAGTTTELNVSDFFRANGLKYTPITFDTS 181

Query: 181 DQTVQGFAGGRCDVLTSDQSQLYALRIKLEDPKSAIVLPEVISKEPLGPMVRQGDDQWLN 240
           D++ +    GRCDVLTSD+SQL+A R KL  P   +VLPE ISKEPLGP+VR+GD++W +
Sbjct: 182 DESAKSLESGRCDVLTSDKSQLFAQRSKLAAPTEYVVLPETISKEPLGPVVRKGDEEWFS 241

Query: 241 IVRWSLFAQLNAEELGVTSANAD-EVKAGTDQNVKRLLGTEGEMGKQLGLGNDWAYAIVK 299
           IV+W+LFA LNAEE G+TS N + E KA  + +V RLLG +GE GK L L  DW   IVK
Sbjct: 242 IVKWTLFAMLNAEEAGITSKNVEAEAKATKNPDVARLLGADGEYGKDLKLPKDWVVQIVK 301

Query: 300 QVGNYGEMFERNIGKGSPLEIERGLNALWNKGGIQYAPPIR 340
           QVGNYGE+FE+N+G+ + L+I+RG+NALWN GGIQYAPP+R
Sbjct: 302 QVGNYGEVFEKNLGQSTDLKIDRGMNALWNNGGIQYAPPVR 342