Pairwise Alignments

Query, 241 a.a., AmpD (negative regulator of AmpC) (NCBI) from Rhodospirillum rubrum S1H

Subject, 258 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas simiae WCS417

 Score =  151 bits (382), Expect = 1e-41
 Identities = 92/239 (38%), Positives = 138/239 (57%), Gaps = 26/239 (10%)

Query: 17  SPNADDRPPGQIIDMLVIHYTGMPSAQAALARLLDPQAQVSAHWLIDED--GTAYKLVEE 74
           S N D+R     +  +++HYT   + + +LA L     QVS+H+LI +D  GT YKLV+E
Sbjct: 28  SVNHDNR-----VQFVIVHYTST-NLERSLALLT--HGQVSSHYLIGDDASGTIYKLVDE 79

Query: 75  RRRAWHAGVSAWGGRPGVNARSIGIELVNPGHEFG-----YRPFPEAQMTTLIALGRGIL 129
            +RAWHAG S W GR  +N+ SIGIE+VNPG++       + P+ EAQ+ +L+ L + I 
Sbjct: 80  SQRAWHAGESEWMGRTWLNSSSIGIEIVNPGYKDTPTGRVWYPYSEAQVKSLVVLLKDIS 139

Query: 130 ERHPIPAAHVVGHADVAPTRKEDPGELFDWQRLASNGIGRWPPPPLGVRPETVDATEGEA 189
           +R+ I   +++GH+D+AP RK DPG LF W+RLA  G+G WP      R +   A E  +
Sbjct: 140 KRNGIDPKNIIGHSDIAPLRKLDPGPLFPWKRLADEGLGVWPNAQAVARFQVQYAAELPS 199

Query: 190 ACL----LEQIGYDIS-------SLQATVLAFQRHFRPKRLDGRIDSETLWLIKALARD 237
                  L ++GY          + +  + AFQ  FRP   DG  D+E+  +++AL R+
Sbjct: 200 ITWFQEELARLGYQTPQTGELDVATRHVIAAFQMRFRPSLFDGTPDAESAAILRALNRN 258