Pairwise Alignments

Query, 1052 a.a., Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) from Rhodospirillum rubrum S1H

Subject, 1059 a.a., transporter from Pseudomonas simiae WCS417

 Score = 1390 bits (3599), Expect = 0.0
 Identities = 698/1043 (66%), Positives = 845/1043 (81%), Gaps = 2/1043 (0%)

Query: 1    MSLSKFFIDRPIFAGVISTVILLAGLISMVLLPISEYPEVVPPSVIVKAQFPGANPKVIA 60
            M+ SKFFI RPIFA V+S +IL+AG IS+  LPISEYPEVVPP+V+V+A FPGANPKVI 
Sbjct: 1    MNFSKFFISRPIFAAVLSLLILIAGAISLFQLPISEYPEVVPPTVVVRANFPGANPKVIG 60

Query: 61   QTVATPLEEQINGVEDMLYMSSQAASDGTMTLTISFKLGTDPDLATQLVQNRVNQALTRL 120
            +TVA PLE+ I GVE+MLYMSSQ+ +DG +TLTI+F LGTD D A   VQNRV +   +L
Sbjct: 61   ETVAAPLEQAITGVENMLYMSSQSTADGKLTLTITFALGTDLDNAQVQVQNRVTRTQPKL 120

Query: 121  PEVTRQLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGIGSVQLF 180
            PE   ++G+T  K+SPDLTMVVHLTSP++RYDMLYL NYALLNVKD+LA++ G+G VQLF
Sbjct: 121  PEEVTRIGITVDKASPDLTMVVHLTSPDQRYDMLYLSNYALLNVKDELARLGGVGDVQLF 180

Query: 181  GSGDYAMRIWLDPQKVAERGMTATEVIAAIRRQNVQVAAGVIGGPPYGTGVAVQVPVNAQ 240
            G GDY++R+WLDP K A R +TAT+V+ AIR QN QVAAG +G  P  T  A Q+ VN Q
Sbjct: 181  GMGDYSLRVWLDPNKTASRNLTATDVVTAIREQNRQVAAGALGAQPAPTATAFQLSVNTQ 240

Query: 241  GRLTDADEFREIIIKR-DGGVVTRLKDVARIDLDAAQYGLRSLLDNKPAVAIPVFQAPGS 299
            GRL   +EF  III+  D G +TRLKD+AR++L ++QY LRSLL+N+PAVAIP+FQ PGS
Sbjct: 241  GRLVTEEEFENIIIRSGDNGEITRLKDIARVELGSSQYALRSLLNNQPAVAIPIFQRPGS 300

Query: 300  NAIEISNQVRATMAELKKSFPEGLDYAIAYDPTVFVRGSIEAVVHTLLEAVALVVIVVIL 359
            NAIEISN+VR  M ELKKSFP+G+DY+I YDPT+FVRGSIEAVVHTL EA+ LVV+VVIL
Sbjct: 301  NAIEISNEVRGKMEELKKSFPQGMDYSIVYDPTIFVRGSIEAVVHTLFEALILVVLVVIL 360

Query: 360  FLQTWRASIIPLLAVPISIIGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVE 419
            FLQTWRASIIPL+AVP+S+IGTFAVMHLFGFS+NALSLFGLVLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLVAVPVSLIGTFAVMHLFGFSLNALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 420  RNIENGLSPRDATLKAMREVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFST 479
            RNIE GL P  AT KAM EVTGPIIA ALVLCAVF+P AFISGLTGQFY+QFALTIA ST
Sbjct: 421  RNIELGLDPFPATEKAMSEVTGPIIATALVLCAVFIPAAFISGLTGQFYKQFALTIAIST 480

Query: 480  VISAFNSLTLSPALAVTLLRGEGAPKDALTRGMDRVLGPF-FRGFNRVFHASSHGYGRGV 538
            VISAFNSLTLSPALA  LLR   APKD  ++ +D++ G + FR FNR F  +SHGY   V
Sbjct: 481  VISAFNSLTLSPALAAVLLRSHDAPKDRFSKILDKIFGGWLFRPFNRFFEKASHGYVGTV 540

Query: 539  GGILGRKSLAMLVYVGLLGATYLGFAQVPPGFVPSQDKQYLVGFAQLPEGATLDRTESVI 598
              ++    +A+ +Y GL+  T+ GFA  P GFVP+QDKQYLV FAQLP+ A+LDRTE VI
Sbjct: 541  RRVIRGSGIALFLYAGLMVLTWFGFAHTPTGFVPAQDKQYLVAFAQLPDAASLDRTEDVI 600

Query: 599  RAMSDIALRDPGVESAIAFPGLSINGFINSPSAGVVFVTLKPFEQRESAELSGFAISQRL 658
            + MSDIAL+ PGVE+A+AFPGLSINGF NSP++G+VFVTLKPF++R+   +S  AI+  L
Sbjct: 601  KRMSDIALKQPGVEAAVAFPGLSINGFTNSPNSGIVFVTLKPFDERKDPSMSAGAIAGAL 660

Query: 659  QQRYAGVSEAFIAIFPPPPVQGLGTIGGFKLQVEDRTDQGYEALDQTMKAVLAKAATTPE 718
              +Y+ + EA++AIFPPPPVQGLGTIGGF+LQ+EDR + GY+ L + ++ ++ K+ TTPE
Sbjct: 661  NGKYSDIQEAYMAIFPPPPVQGLGTIGGFRLQIEDRGNLGYDELYKEVQNIITKSRTTPE 720

Query: 719  LAGVFSSYKIGTPELYADLDRTKAAQLGVDVQEVFDTMQIYLGSLYVNDFNKFGRTYQVI 778
            L G+F+SY +  P++ A +DR KA   GV + ++FDT+QIYLGSLY NDFN+FGRTYQV 
Sbjct: 721  LFGLFTSYTVNVPQVDAAIDREKAKTHGVAISDIFDTLQIYLGSLYANDFNRFGRTYQVN 780

Query: 779  AQADGAFRSKPDDILRLQTRNFDGRMVPLGAVVTLSDTSGPDSAMRYNAFRSADLNGGPA 838
             QA+  FR   D I +L+ RN  G M+PL   + +SDTSGPD  M YN F +A++NG  A
Sbjct: 781  VQAEQQFRLDEDQIGQLKVRNNKGEMIPLATFIKVSDTSGPDRVMHYNGFITAEINGNAA 840

Query: 839  PGYSTGQAQGAMTKLLAETLPKGMDFEWTELTYQQILAGNTTMMVFPLCVLLVFLVLAAQ 898
            PGYS+GQA+ A+ KLL E LP GM +EWT+LTYQQIL+GNT + VFPLCVLL FLVLAAQ
Sbjct: 841  PGYSSGQAEAAIEKLLKEELPNGMTYEWTDLTYQQILSGNTALFVFPLCVLLAFLVLAAQ 900

Query: 899  YESLFLPLAIILIVPLCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFARE 958
            YES  LPLA+ILIVP+ LLSAITGV ++GGDNN+FTQIGL VL+GLACKNAILIVEFA++
Sbjct: 901  YESWSLPLAVILIVPMTLLSAITGVIISGGDNNIFTQIGLIVLVGLACKNAILIVEFAKD 960

Query: 959  LEIDGQDTVPAAIEAARLRLRPILMTSIAFIMGVVPLVISSGAGAEMRHAMGIAVFSGML 1018
             + +G D + A +EA RLRLRPILMTS AFIMGVVPLV+SSGAGAEMRHAMG+AVFSGM+
Sbjct: 961  KQAEGLDPLAAVLEACRLRLRPILMTSFAFIMGVVPLVLSSGAGAEMRHAMGVAVFSGMI 1020

Query: 1019 GVTVFGLFLTPVFYVLMRSLEKR 1041
            GVT FGL LTPVFYVL+R   +R
Sbjct: 1021 GVTFFGLLLTPVFYVLIRRYVER 1043