Pairwise Alignments

Query, 1052 a.a., Hydrophobe/amphiphile efflux-1 HAE1 (NCBI) from Rhodospirillum rubrum S1H

Subject, 1089 a.a., RND efflux system, inner membrane transporter from Variovorax sp. SCN45

 Score = 1449 bits (3750), Expect = 0.0
 Identities = 718/1039 (69%), Positives = 875/1039 (84%), Gaps = 1/1039 (0%)

Query: 1    MSLSKFFIDRPIFAGVISTVILLAGLISMVLLPISEYPEVVPPSVIVKAQFPGANPKVIA 60
            M+LSKFFIDRPIFAGV+S ++L+AGLI++  LPISEYPEV PPSV+V+AQ+PGANPKVIA
Sbjct: 1    MNLSKFFIDRPIFAGVLSLLMLIAGLIALRGLPISEYPEVAPPSVVVRAQYPGANPKVIA 60

Query: 61   QTVATPLEEQINGVEDMLYMSSQAASDGTMTLTISFKLGTDPDLATQLVQNRVNQALTRL 120
            +TVATPLEEQINGVE MLYM SQA +DG +TLT++F+LGTDPD A QLVQNRV+QA  RL
Sbjct: 61   ETVATPLEEQINGVEGMLYMGSQATTDGVLTLTVTFRLGTDPDKAQQLVQNRVSQAEPRL 120

Query: 121  PEVTRQLGVTTVKSSPDLTMVVHLTSPNERYDMLYLRNYALLNVKDQLAKIQGIGSVQLF 180
            PE  R+LG+TTVKS+PDLTMVVHL SPN RYD+ YLRNYA+LNVKD LA+I+G+G VQ+F
Sbjct: 121  PEEVRRLGITTVKSAPDLTMVVHLVSPNNRYDINYLRNYAVLNVKDPLARIEGVGQVQIF 180

Query: 181  GSGDYAMRIWLDPQKVAERGMTATEVIAAIRRQNVQVAAGVIGGPPYGTGVAVQVPVNAQ 240
            G GDY+MR+WLDPQKVA+RG++A++V+AAIR QNVQ AAGV+G  P  +GV +Q+ +NAQ
Sbjct: 181  GGGDYSMRVWLDPQKVAQRGLSASDVVAAIRGQNVQAAAGVVGASPGLSGVDMQLSINAQ 240

Query: 241  GRLTDADEFREIIIKRD-GGVVTRLKDVARIDLDAAQYGLRSLLDNKPAVAIPVFQAPGS 299
            GRL   +EF +II+K    G VTRL+D+ R+++ AA Y LRSLL+N PAV + VFQAPGS
Sbjct: 241  GRLQSEEEFGDIIVKSGTDGAVTRLRDIGRLEMGAADYSLRSLLNNDPAVGMGVFQAPGS 300

Query: 300  NAIEISNQVRATMAELKKSFPEGLDYAIAYDPTVFVRGSIEAVVHTLLEAVALVVIVVIL 359
            NA++IS  VR TM EL K+ PEGL+Y IAYDPT FVR SIE+V+HTLLEA+ LVV+VVIL
Sbjct: 301  NALDISANVRKTMEELNKNMPEGLEYRIAYDPTQFVRASIESVIHTLLEAIMLVVLVVIL 360

Query: 360  FLQTWRASIIPLLAVPISIIGTFAVMHLFGFSINALSLFGLVLAIGIVVDDAIVVVENVE 419
            FLQTWRASIIPLLAVP+S+IGTFAV+H+ GFSINALSLFGLVLAIGIVVDDAIVVVENVE
Sbjct: 361  FLQTWRASIIPLLAVPVSVIGTFAVLHVLGFSINALSLFGLVLAIGIVVDDAIVVVENVE 420

Query: 420  RNIENGLSPRDATLKAMREVTGPIIAIALVLCAVFVPIAFISGLTGQFYRQFALTIAFST 479
            RNIE GL+PR+AT +AMREV+GPIIAIALVL AVFVP+AFISGLTGQFYRQFA+TIA ST
Sbjct: 421  RNIEAGLTPREATYRAMREVSGPIIAIALVLVAVFVPLAFISGLTGQFYRQFAVTIAIST 480

Query: 480  VISAFNSLTLSPALAVTLLRGEGAPKDALTRGMDRVLGPFFRGFNRVFHASSHGYGRGVG 539
            VISA NSLTLSPALA  LLRG   PKDALTRGMDR  G  FRGFN++FH  S  Y  GV 
Sbjct: 481  VISAINSLTLSPALAALLLRGHDQPKDALTRGMDRAFGWLFRGFNKLFHRGSEAYSGGVK 540

Query: 540  GILGRKSLAMLVYVGLLGATYLGFAQVPPGFVPSQDKQYLVGFAQLPEGATLDRTESVIR 599
             ++ RK+L + +YV L+  T+  F  VP GFVP+QDKQYL+GFAQLP+GATLDRT+ VI+
Sbjct: 541  NVISRKALMLAIYVALIAVTFGLFKAVPGGFVPAQDKQYLIGFAQLPDGATLDRTDEVIQ 600

Query: 600  AMSDIALRDPGVESAIAFPGLSINGFINSPSAGVVFVTLKPFEQRESAELSGFAISQRLQ 659
             M +I  ++P VE AIAFPGLSINGF NS ++G+VF TLKPF+QR+  + SG A++ +L 
Sbjct: 601  RMGEIMKKNPNVEDAIAFPGLSINGFTNSSNSGIVFATLKPFDQRKRPDQSGGAVAGQLN 660

Query: 660  QRYAGVSEAFIAIFPPPPVQGLGTIGGFKLQVEDRTDQGYEALDQTMKAVLAKAATTPEL 719
              +AG+ +AFI +FPPPPV GLGT GGFKLQ+EDR   GY+ +D  +KA +AKA   PEL
Sbjct: 661  GAFAGIQDAFIVMFPPPPVAGLGTTGGFKLQLEDRASVGYDQMDAAVKAFMAKAQQAPEL 720

Query: 720  AGVFSSYKIGTPELYADLDRTKAAQLGVDVQEVFDTMQIYLGSLYVNDFNKFGRTYQVIA 779
            AG+F+S+++  P+LYAD+DRTKA QLGV V ++FDTMQIYLGSLY NDFNKFGRTY V  
Sbjct: 721  AGMFTSWQVNVPQLYADIDRTKARQLGVPVTDIFDTMQIYLGSLYANDFNKFGRTYSVRV 780

Query: 780  QADGAFRSKPDDILRLQTRNFDGRMVPLGAVVTLSDTSGPDSAMRYNAFRSADLNGGPAP 839
            QAD  +R++ +D+  L+ R+  G MVPL A++ ++ T GP+ AMRYN + +AD+NGGPAP
Sbjct: 781  QADAPYRARAEDVGLLKVRSTSGEMVPLSALMKVNSTFGPERAMRYNGYLAADINGGPAP 840

Query: 840  GYSTGQAQGAMTKLLAETLPKGMDFEWTELTYQQILAGNTTMMVFPLCVLLVFLVLAAQY 899
            GYS+GQAQ A+TK+ AETLPKG+ FEWTELTYQ+ILAGN+  +VFPL +LLVFLVLAAQY
Sbjct: 841  GYSSGQAQDAITKIAAETLPKGVSFEWTELTYQEILAGNSAFLVFPLAILLVFLVLAAQY 900

Query: 900  ESLFLPLAIILIVPLCLLSAITGVWLTGGDNNMFTQIGLFVLIGLACKNAILIVEFAREL 959
            ESL LP+AIILIVP+ +++A+ GVW++GGDNN+FTQIGL VL+GL+ KNAILIVEFAREL
Sbjct: 901  ESLTLPIAIILIVPMGIMAAMAGVWISGGDNNVFTQIGLIVLVGLSAKNAILIVEFAREL 960

Query: 960  EIDGQDTVPAAIEAARLRLRPILMTSIAFIMGVVPLVISSGAGAEMRHAMGIAVFSGMLG 1019
            E  G+  V AAIEA+RLRLRPILMTS+AF+MGV+PLV+S+GAG+EMR AMG+AVF+GM+G
Sbjct: 961  EFAGRTPVQAAIEASRLRLRPILMTSLAFVMGVLPLVLSTGAGSEMRKAMGVAVFAGMIG 1020

Query: 1020 VTVFGLFLTPVFYVLMRSL 1038
            VT FGLFLTPVFYVL+R L
Sbjct: 1021 VTAFGLFLTPVFYVLLRRL 1039