Pairwise Alignments

Query, 510 a.a., hypothetical protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 335 a.a., Transcriptional regulator, Cro/CI family from Pseudomonas putida KT2440

 Score = 52.8 bits (125), Expect = 2e-11
 Identities = 64/237 (27%), Positives = 87/237 (36%), Gaps = 18/237 (7%)

Query: 21  GALLRATRLRVGEPIARVAESLRIRQGYLQAIEEGRYQDLPGAAYAVGFVRAYADHLGLH 80
           G LLR  R +     A VA  L +    L  +E G +  LPG  +A G++RAYA  + L 
Sbjct: 17  GELLRLAREKRDWSQAEVARKLNLTVSSLNHVETGAFDKLPGHTFARGYIRAYAKLMDLD 76

Query: 81  AEEVVRRFKDETQSMAPAA------TLEFPAPAGEGGVPAGALVAVALILAACAYGAWYW 134
              +V  F   T + A  +       +E P       +     V++ L++A    G ++W
Sbjct: 77  QAALVDAFDRYTGTHAKGSDVHSLGRIEEPVRLSHNILRG---VSLLLLVAVVGGGFFWW 133

Query: 135 VSSAEKPVAELIPDIPDRLAALVGRSPGLPPGPSPAGEPLPVAPPQAGPSGENAP--ADP 192
                    EL     + +      S        P  EP   A   AG   E+AP   + 
Sbjct: 134 QDQGSLRGKELAKIALEHVEV---ESADGTTQIHPLDEPEDQA-VSAGQQPESAPLALEQ 189

Query: 193 AMAGSPVETLMPGPDDEPRGATDPTSGLPLVSAFPVAPVTPIDQGATAEAKPDAAAP 249
             A  P          E   AT P    P  S    APVTP  Q   A A   A AP
Sbjct: 190 GAAEQPAAAEQAPVSSEATIATAPVQPAPAASP---APVTPPVQATAAPAPAPAPAP 243



 Score = 50.1 bits (118), Expect = 1e-10
 Identities = 36/102 (35%), Positives = 47/102 (46%), Gaps = 3/102 (2%)

Query: 286 VDEEPAPPPVVAAPPKTPAEPAVTVVQRPEPARPAQPTPEPAKPAQPTPEP-AKPAQPTP 344
           V+ E A       P   P + AV+  Q+PE A  A       +PA     P +  A    
Sbjct: 152 VEVESADGTTQIHPLDEPEDQAVSAGQQPESAPLALEQGAAEQPAAAEQAPVSSEATIAT 211

Query: 345 EPARPAPSTPPSPPAAPA-PSAAPSPQPAPPPAAGPAVSPPA 385
            P +PAP+  P+P   P   +AAP+P PAP PA   AV P A
Sbjct: 212 APVQPAPAASPAPVTPPVQATAAPAPAPAPAPAVA-AVEPAA 252



 Score = 42.4 bits (98), Expect = 3e-08
 Identities = 38/107 (35%), Positives = 45/107 (42%), Gaps = 17/107 (15%)

Query: 260 EPEVLVSHTPESPSGAPLPPPPRGNAVDEEPAPPPVVAAPPKTPAEPAVTVVQRPEPARP 319
           EPE       + P  APL       A+++  A  P  AA  + P     T+        P
Sbjct: 168 EPEDQAVSAGQQPESAPL-------ALEQGAAEQP--AAAEQAPVSSEATIA-----TAP 213

Query: 320 AQPTPEPAKPAQPTPEPAKPAQPTPEPARPAPSTPPSPPAA-PAPSA 365
            QP P  A PA  TP     A P P PA PAP+     PAA PA SA
Sbjct: 214 VQPAPA-ASPAPVTPPVQATAAPAPAPA-PAPAVAAVEPAAVPAGSA 258