Pairwise Alignments

Query, 310 a.a., RarD protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 296 a.a., predicted chloramphenical resistance permease (NCBI) from Escherichia coli BW25113

 Score =  208 bits (529), Expect = 1e-58
 Identities = 117/284 (41%), Positives = 164/284 (57%), Gaps = 3/284 (1%)

Query: 15  AGSSARGVAAALGAYGVWGISPLFFKAVSEVSALEILSHRVLWAMVVMGITLGLRGELAA 74
           A  + +GV  AL AY +WGI+P +FK +  V A EIL+HRV+W+   M + + +  + + 
Sbjct: 3   AKQTRQGVLLALAAYFIWGIAPAYFKLIYYVPADEILTHRVIWSFFFMVVLMSICRQWSY 62

Query: 75  SLRFLANRRVFLLMLAATVAISINWLTFIHAATSGHAMQGSLGYYIFPLVTVVLGRLVLG 134
               +   +   ++  + V I  NWL FI A  + H ++ SLGY+I PLV +VLG + LG
Sbjct: 63  LKTLIQTPQKIFMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLG 122

Query: 135 EEMSRRQGLAVALAAAGVGIALWRTGSLPWISLTLASTFALYGLIRKTVSVPPLAGLFIE 194
           E   R Q LAV LA  GV + LW  GSLP I+L LA +FA YGL+RK ++V    G+ IE
Sbjct: 123 ERFRRMQWLAVILAICGVLVQLWTFGSLPIIALGLAFSFAFYGLVRKKIAVEAQTGMLIE 182

Query: 195 ALLLSPV-LIGLLAWIELKGGGLAFFDGPWGRSLWLMALGPLTAVPLFFFTWAARRLRLS 253
            + L PV  I L A  +     +     P   +L L+A G +T VPL  FT AA RLRLS
Sbjct: 183 TMWLLPVAAIYLFAIADSSTSHMG--QNPMSLNLLLIAAGIVTTVPLLCFTAAATRLRLS 240

Query: 254 TLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALYL 297
           TLG  QY  PT+ F LA   + E     +++TF FIW  +A+++
Sbjct: 241 TLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFV 284



 Score = 23.1 bits (48), Expect = 0.008
 Identities = 12/56 (21%), Positives = 19/56 (33%)

Query: 243 FTWAARRLRLSTLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALYLW 298
           F WA     +    +  + NP +   L  +   E     + L       GV + LW
Sbjct: 90  FIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145