Pairwise Alignments

Query, 310 a.a., RarD protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 302 a.a., hypothetical protein from Agrobacterium fabrum C58

 Score =  201 bits (512), Expect = 1e-56
 Identities = 104/289 (35%), Positives = 158/289 (54%), Gaps = 3/289 (1%)

Query: 9   SLSPSPAGSSARGVAAALGAYGVWGISPLFFKAVSEVSALEILSHRVLWAMVVMGITLGL 68
           +L     G SARG A AL AY +WG  P + KAV+ +S +E++ HRV+W++ +  + L  
Sbjct: 6   TLPAQEGGDSARGFAFALSAYLLWGFLPFYMKAVAHISPIEVIVHRVIWSVPIAAVVLIA 65

Query: 69  RGELAASLRFLANRRVFLLMLAATVAISINWLTFIHAATSGHAMQGSLGYYIFPLVTVVL 128
            G  A     L N ++  +       ISINW  +I +  +G A+  +LGY+I PL ++ L
Sbjct: 66  LGRTAEIRTALRNPKMLAMASLTAALISINWGVYIWSIGAGRALDAALGYFINPLFSIFL 125

Query: 129 GRLVLGEEMSRRQGLAVALAAAGVGIALWRTGSLPWISLTLASTFALYGLIRKTVSVPPL 188
           G ++L E++   Q  A+ L    V I  W  GSLPW+S+ L  ++  Y   RKT+ +   
Sbjct: 126 GAVLLKEKLYPAQIAAICLVGLAVAILTWHAGSLPWVSIALTVSWGFYAFFRKTLPIGAT 185

Query: 189 AGLFIEALLLSPVLIGLLAWIELKGGGLAFFDGPWGRSLWLMAL-GPLTAVPLFFFTWAA 247
            G  +E +LLS   + ++ W+     G A F G      WL+A  G +TAVPL  +   A
Sbjct: 186 QGFLLEVMLLSIPAVLVMIWLAF--SGQAHFMGGNSADTWLLAASGVITAVPLILYGNGA 243

Query: 248 RRLRLSTLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALY 296
           + LRLST+G++QY  PT+ F +A  +FKEP     +  F  IW  +A+Y
Sbjct: 244 KLLRLSTIGIMQYIAPTMIFLIAIFIFKEPFDMVRMAAFAMIWVALAIY 292



 Score = 27.7 bits (60), Expect = 4e-04
 Identities = 33/167 (19%), Positives = 60/167 (35%), Gaps = 38/167 (22%)

Query: 141 QGLAVALAAAGVGIALWRTGSLPWISLTLASTFALYGLIRKTVSVPPLAGLFIEAL---- 196
           +G A AL+A      LW  G LP+    +A    +  ++ + +   P+A + + AL    
Sbjct: 17  RGFAFALSA----YLLW--GFLPFYMKAVAHISPIEVIVHRVIWSVPIAAVVLIALGRTA 70

Query: 197 -----LLSPVLIGLLAWIELKGGGLAFFDGPWGRSLWLMALGPLTAVPLFFFTWAARRLR 251
                L +P ++ + +         A     WG  +W +  G      L +F        
Sbjct: 71  EIRTALRNPKMLAMASLTA------ALISINWGVYIWSIGAGRALDAALGYFI------- 117

Query: 252 LSTLGVIQYTNPTIQFALAALVFKEPVTTTELLTFGFIWAGVALYLW 298
                     NP     L A++ KE +   ++     +   VA+  W
Sbjct: 118 ----------NPLFSIFLGAVLLKEKLYPAQIAAICLVGLAVAILTW 154