Pairwise Alignments

Query, 736 a.a., chemotaxis sensory transducer (NCBI) from Rhodospirillum rubrum S1H

Subject, 681 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1

 Score =  269 bits (687), Expect = 4e-76
 Identities = 164/370 (44%), Positives = 226/370 (61%), Gaps = 10/370 (2%)

Query: 224 VVAVLLGLSL------VIGRGIAGPLVAMTGRMRKMASGDLETAIPGEATADQRRDEVGE 277
           ++AV+ GL +      ++ +GI GP+  +T  M ++A+GD   ++ G    D   +E GE
Sbjct: 313 IIAVIGGLGITFAAAGILAKGITGPIAHITNAMSRLATGDTAISVEG---VDLPTEE-GE 368

Query: 278 MAGALVVFRETLRDAKRLAEEHRHEEEQKHIRRQQVDEQIRAFEMTVVRLLDGLVSADQS 337
           MA A+ VFR     A++LA E + E+E K  RRQ ++    AF   V   L  +  A + 
Sbjct: 369 MARAVQVFRNNHLAAEKLAAEQKAEQEAKERRRQAIERLTAAFRQEVSGALAAVGDATRL 428

Query: 338 VRSTTTRLVDGARDTMSEANEVAASAEHASANVETVASAAEELSASIQEIARQVEQSSGV 397
           + ++   L   A+     A  VAA+AE AS NVETVA AAEELSASI EI+RQV  S+ V
Sbjct: 429 LNNSANSLGSSAQSMEGHAAAVAAAAEEASINVETVAGAAEELSASINEISRQVATSAQV 488

Query: 398 ARRAVEETGEATKGIAELEERVGQITDIVKLISDIASQTNLLALNATIEAARAGDAGKGF 457
           +++AV E       +  L +    I ++V +I DIA QTNLLALNATIEAARAG+AGKGF
Sbjct: 489 SKQAVAEAERTNALVHGLADAARNIGEVVTMIGDIAGQTNLLALNATIEAARAGEAGKGF 548

Query: 458 AVVAEEVKNLANQTQKATKDITGRIADVEEATTRSVEAIRDVSKVIGEIHEISASISAAV 517
           AVVA EVK+LA QT +AT  IT ++  V+ AT ++V AI+ +  +I  I+E+S++I+AAV
Sbjct: 549 AVVANEVKHLATQTARATSQITEQVGAVQAATDQAVTAIQGIGAIIERINEVSSAIAAAV 608

Query: 518 EEQGAATREIARNVDEAATGTNRVSSAIGRVRAAAEEANSEAGDMERASRDLGHQAEVLK 577
           EEQ A TR+IARNV EAA GT  VS  +  V + A E    A D+  A   LG Q++ L 
Sbjct: 609 EEQDATTRDIARNVAEAAGGTREVSRHVSDVTSEAGETGKTATDVLGAVTALGSQSDALN 668

Query: 578 GEVAEFLQGI 587
             V  FL G+
Sbjct: 669 TSVQRFLAGV 678



 Score = 48.9 bits (115), Expect = 8e-10
 Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 18/220 (8%)

Query: 287 ETLRDAKRLAEEHRHEEEQKHIRRQQVDEQIRAFEMTVVRLLDGLVSADQSVRSTTTRLV 346
           ET+  A        +E  ++     QV +Q  A       L+ GL  A +++    T + 
Sbjct: 462 ETVAGAAEELSASINEISRQVATSAQVSKQAVAEAERTNALVHGLADAARNIGEVVTMIG 521

Query: 347 DGARDT---MSEANEVAASAEHASANVETVASAAEELSASIQEIARQVEQSSGVARRAVE 403
           D A  T      A   AA A  A      VA+  + L+        Q+ +  G  + A +
Sbjct: 522 DIAGQTNLLALNATIEAARAGEAGKGFAVVANEVKHLATQTARATSQITEQVGAVQAATD 581

Query: 404 ETGEATKGIAELEERVGQIT---------------DIVKLISDIASQTNLLALNATIEAA 448
           +   A +GI  + ER+ +++               DI + +++ A  T  ++ + +   +
Sbjct: 582 QAVTAIQGIGAIIERINEVSSAIAAAVEEQDATTRDIARNVAEAAGGTREVSRHVSDVTS 641

Query: 449 RAGDAGKGFAVVAEEVKNLANQTQKATKDITGRIADVEEA 488
            AG+ GK    V   V  L +Q+      +   +A VE A
Sbjct: 642 EAGETGKTATDVLGAVTALGSQSDALNTSVQRFLAGVETA 681