Pairwise Alignments

Query, 326 a.a., TRAP transporter solute receptor, TAXI family (NCBI) from Rhodospirillum rubrum S1H

Subject, 316 a.a., periplasmic binding subunit of unknown solute from Pseudomonas putida KT2440

 Score =  153 bits (387), Expect = 5e-42
 Identities = 106/316 (33%), Positives = 150/316 (47%), Gaps = 5/316 (1%)

Query: 10  ALTVAAMPAGFGGGAALAADPRIVTIGTGGVTGVYYPAGGAICRMVNKHRAEHGIRCAVE 69
           AL +A     F   AA  A P  + I TGG +GVYYP G  I ++ + H  E G +  V+
Sbjct: 4   ALRLALASTLFAVSAAAQAAPTFINILTGGTSGVYYPVGVGISQIYS-HGIE-GSKTTVQ 61

Query: 70  ATDGSVENLESLRAGDLDLGIAQADWVHHAWEGGAKYQNRAAFAGLRTLLELHAESFTVV 129
           AT  SVENL  L+AG  +L  A  D V  AW+G A+   +     LR +   +     +V
Sbjct: 62  ATKASVENLNLLQAGRGELAFALGDSVADAWKGDAEAGFKTPLKKLRAIAGTYPNYIQIV 121

Query: 130 ARKATGIRTFDDLKGRRVSLGITGSGQRATAEVLLAAMDWTLKDFSAVPEVKPAEQSAAL 189
           A K +GI +  DLKG+R+S+G   SG    A  +  A   T +D   V  +  AE    +
Sbjct: 122 ASKESGITSLSDLKGKRISVGAPKSGTELNARAIFKAAGLTYQDMGKVEYLPYAESVELI 181

Query: 190 CDDRVDAIIYVVGHPNGAIIEATTSCDAGFVAVDNAGTASLIAENPFYAKTVIPAKLYRG 249
            + ++DA +   G    AI +   +    FV +  A   + I  N  Y    IPA  Y G
Sbjct: 182 KNRQLDATLQSSGLGQAAIRDLAATLPVVFVPIP-AEVVTRIGNNA-YQPATIPANTYDG 239

Query: 250 NPADTPTFGVHATLVATAALPDDVAYALVKAVMENFDDFRKLHPAFAGLVRESMVPAQST 309
             AD  T  ++  LV  A + DD+AY + K + EN       H A   +  E+       
Sbjct: 240 QSADVSTAAINNILVTRADIGDDLAYQMTKLIFENLPRLVTAHAAAKDIQAEN-AAKNLP 298

Query: 310 VPVHPGALRYFQEIGL 325
           +P+HPGA RYF+E  L
Sbjct: 299 IPLHPGAARYFKEKNL 314