Pairwise Alignments

Query, 541 a.a., TPR domain protein (NCBI) from Rhodospirillum rubrum S1H

Subject, 445 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

 Score =  197 bits (500), Expect = 9e-55
 Identities = 152/413 (36%), Positives = 203/413 (49%), Gaps = 24/413 (5%)

Query: 97  ALRGAGLIDAAAAAWEGVLRGCPQR---FATLFNLARLRDDQGRGEEALALYRRACLADP 153
           A   AG ID AAA  +   + CP     +A L  +  L D   R ++ L    RA    P
Sbjct: 19  AAMAAGEIDQAAAHLQAAAQLCPDEPMIWALLGEVLLLLD---RPQDGLGALDRALALAP 75

Query: 154 AASDAAYNLGNLLARRGALAQAAEVLGKAASVTPHDARIQTNLGIVLRRLGDAAGALACQ 213
                 ++      R   LA+A       A +  + A +  NLG++ R  GD +GA A  
Sbjct: 76  EDPRPRFHRARAFERLDRLAEALADQEALAILCANKAEVWHNLGLLRRAGGDPSGAEAAF 135

Query: 214 RRAVALDPDLADAQWNLANLLLALDDYDEGFARYEWRKRRAPWRLVDP-PLAEWRGEDLA 272
            RA+AL+P  A++   LA+ LL    + EGFA YE R     W+   P P   WRGED A
Sbjct: 136 GRALALEPSRAESALALAHSLLGRAAWAEGFAHYEARLSLPGWQRPAPLPGRRWRGEDPA 195

Query: 273 GRRLLVGLEQGAGDMIQAARFLPVLAGRGARVIVEAPDALAGLLATVDGVESVVAPGAWA 332
           GR LLV  EQG GD +Q  R+LP++ G G +VIVE    L  L+A   GV++ +A G   
Sbjct: 196 GRTLLVSAEQGLGDGVQFLRYLPLIKGAG-KVIVECHPPLRRLIAAQPGVDATIAFG--- 251

Query: 333 AARATCHIRAFSLPYRLGLRFADLAATAGPYLRVPPRTPTPPALPPGGQGPCVGLCWSGN 392
              A   + A  L   L      LA  A    R+P    + P L P G  P +GL W  +
Sbjct: 252 --EAIPDLGAEGLTIPLASLALPLAGGAPLGERIP--YVSKPRLRPQGDRPRIGLAWRSS 307

Query: 393 PDFTENAVRAAPLAAFAPLTAVEGLTFFSLQKGPAVAELAASGLPVIDLDPW--LVDYAA 450
                   R  PLAA A L A+  + + SLQ  P         LP +DL P   + D   
Sbjct: 308 D--RAELRRDPPLAALAALAAIPAVDWVSLQFAPT----DYPALP-LDLRPMASVDDLDD 360

Query: 451 TAAAMARLDMVVTTDTSVAHLAGALGRPCLLLLAAHCDWRWGIGRETSPWYPS 503
           TAA +A LD+V++ DT+VAHLAGA+G+P  +LL    DWRW    ++SPWYPS
Sbjct: 361 TAALIADLDLVISVDTAVAHLAGAMGKPLWVLLGPRADWRWTASAQSSPWYPS 413



 Score = 39.3 bits (90), Expect = 3e-07
 Identities = 38/149 (25%), Positives = 58/149 (38%)

Query: 26  RAEAAWSRGDRHRAMTLARLGLGQDDGHPRLLAVLGAFEQAEGRSAAAAGLFRRAMARCG 85
           RA AA + G+  +A    +         P + A+LG       R     G   RA+A   
Sbjct: 16  RAGAAMAAGEIDQAAAHLQAAAQLCPDEPMIWALLGEVLLLLDRPQDGLGALDRALALAP 75

Query: 86  DDPLMLHNLGVALRGAGLIDAAAAAWEGVLRGCPQRFATLFNLARLRDDQGRGEEALALY 145
           +DP    +   A      +  A A  E +   C  +     NL  LR   G    A A +
Sbjct: 76  EDPRPRFHRARAFERLDRLAEALADQEALAILCANKAEVWHNLGLLRRAGGDPSGAEAAF 135

Query: 146 RRACLADPAASDAAYNLGNLLARRGALAQ 174
            RA   +P+ +++A  L + L  R A A+
Sbjct: 136 GRALALEPSRAESALALAHSLLGRAAWAE 164



 Score = 27.3 bits (59), Expect = 0.001
 Identities = 29/101 (28%), Positives = 40/101 (39%), Gaps = 2/101 (1%)

Query: 45  LGLGQDDGHPRLLAVLGAFEQAEGRSAAAAGLFRRAMARCGDDPLMLHNLGVALRGAGLI 104
           L L  +D  PR      AFE+ +  + A A     A+  C +   + HNLG+  R  G  
Sbjct: 71  LALAPEDPRPRFHRAR-AFERLDRLAEALADQEALAIL-CANKAEVWHNLGLLRRAGGDP 128

Query: 105 DAAAAAWEGVLRGCPQRFATLFNLARLRDDQGRGEEALALY 145
             A AA+   L   P R  +   LA     +    E  A Y
Sbjct: 129 SGAEAAFGRALALEPSRAESALALAHSLLGRAAWAEGFAHY 169