Pairwise Alignments

Query, 595 a.a., TPR repeat (NCBI) from Rhodospirillum rubrum S1H

Subject, 659 a.a., tetratricopeptide repeat protein from Magnetospirillum magneticum AMB-1

 Score = 69.7 bits (169), Expect = 4e-16
 Identities = 60/195 (30%), Positives = 81/195 (41%)

Query: 123 GRRDQAIALLDDALRRHPDEAELHRRQGVLLRRAGRAAQAIAPWRALVALRPGDAAAWSS 182
           GR  +A+ L   AL   P  AE    +G LL   GR  +A   +     L P    AW +
Sbjct: 56  GRTGEALTLHGQALALAPQLAEAWCNRGDLLSDLGRLEEAEGDFVRACDLSPALLPAWFN 115

Query: 183 LGAGLGESGLDEEAEKALRRAVALAADEPDWTYNLAHFLIERDRLEDALPLLDAAVARAP 242
           LG      G   +AE   RRA ALA   P     LA  L    + E A   ++AA   AP
Sbjct: 116 LGNVRLRRGDTAQAEPCYRRAAALAPHLPLIHAQLARCLDAMGQAEGAADAMEAAWRLAP 175

Query: 243 ERAHYHTNLGVCRLGLGDIKGAIAAHRQALALDPDEPEARYDLAWALLLAGAWEEGWAAH 302
           +     T+LG  +   G +  A  + R A++L+P    A Y+L       G   E  A  
Sbjct: 176 DDWRLLTDLGALQQQAGRLHAAQNSLRAAISLNPSHAAAHYNLGNVFYGEGRAAEAVACW 235

Query: 303 EARWRMGRFTGRRAA 317
           +A W M    G  A+
Sbjct: 236 QAAWSMDPSLGEAAS 250



 Score = 67.4 bits (163), Expect = 2e-15
 Identities = 58/175 (33%), Positives = 76/175 (43%), Gaps = 5/175 (2%)

Query: 115 RADRLEELGRRDQAIALLDDALRRHPDEAELHR---RQGVLLRRAGRAAQAIAPWRALVA 171
           +A+ L   GR D+A AL    LR+ P   E  +     GV+    GR  +A+      +A
Sbjct: 11  QAEALHNQGRVDEAEALYHRVLRQAPQSPEAAKSLTNLGVIAHGRGRTGEALTLHGQALA 70

Query: 172 LRPGDAAAWSSLGAGLGESGLDEEAEKALRRAVALA-ADEPDWTYNLAHFLIERDRLEDA 230
           L P  A AW + G  L + G  EEAE    RA  L+ A  P W +NL +  + R     A
Sbjct: 71  LAPQLAEAWCNRGDLLSDLGRLEEAEGDFVRACDLSPALLPAW-FNLGNVRLRRGDTAQA 129

Query: 231 LPLLDAAVARAPERAHYHTNLGVCRLGLGDIKGAIAAHRQALALDPDEPEARYDL 285
            P    A A AP     H  L  C   +G  +GA  A   A  L PD+     DL
Sbjct: 130 EPCYRRAAALAPHLPLIHAQLARCLDAMGQAEGAADAMEAAWRLAPDDWRLLTDL 184



 Score = 50.8 bits (120), Expect = 2e-10
 Identities = 85/312 (27%), Positives = 115/312 (36%), Gaps = 79/312 (25%)

Query: 14  LIARADALREGGAPAEARDLYRLVLDRHPGHGPA---LAGLGRILLGLGQPTAALESLGA 70
           L+ +A+AL   G   EA  LY  VL + P    A   L  LG I  G G+   AL   G 
Sbjct: 8   LLQQAEALHNQGRVDEAEALYHRVLRQAPQSPEAAKSLTNLGVIAHGRGRTGEALTLHGQ 67

Query: 71  AVAADP-------TRLDWLADL------------AVALAGARRPA--------------- 96
           A+A  P        R D L+DL            A  L+ A  PA               
Sbjct: 68  ALALAPQLAEAWCNRGDLLSDLGRLEEAEGDFVRACDLSPALLPAWFNLGNVRLRRGDTA 127

Query: 97  -------EALSAAEGLPATAGALGFRADRLEELGRRDQAIALLDDALRRHPDEAELHRRQ 149
                   A + A  LP     L   A  L+ +G+ + A   ++ A R  PD+  L    
Sbjct: 128 QAEPCYRRAAALAPHLPLIHAQL---ARCLDAMGQAEGAADAMEAAWRLAPDDWRLLTDL 184

Query: 150 GVLLRRAGRAAQAIAPWRALVALRPGDAAAWSSLGAGLGESGLDEEAEKALRRAVALAAD 209
           G L ++AGR   A    RA ++L P  AAA  +LG      G         R A A+A  
Sbjct: 185 GALQQQAGRLHAAQNSLRAAISLNPSHAAAHYNLGNVFYGEG---------RAAEAVACW 235

Query: 210 EPDWTYNLAHFLIERDRLEDALPLLDAAVARAPERAHYHTNLGVCRLGLGDIKGAIAAHR 269
           +  W+ +               P L  A + A    HY  +L       GD  G +  HR
Sbjct: 236 QAAWSMD---------------PSLGEAASNALNGLHYLPDL------TGDEVGRV--HR 272

Query: 270 QALALDPDEPEA 281
           + +  D   P A
Sbjct: 273 RMMERDGSPPPA 284



 Score = 37.0 bits (84), Expect = 3e-06
 Identities = 49/186 (26%), Positives = 61/186 (32%), Gaps = 48/186 (25%)

Query: 176 DAAAWSSLGAGLGESGLDEEAEKALRRAVALAADEPDWTYNLAHFLI---ERDRLEDALP 232
           D A        L   G  +EAE    R +  A   P+   +L +  +    R R  +AL 
Sbjct: 4   DPALLLQQAEALHNQGRVDEAEALYHRVLRQAPQSPEAAKSLTNLGVIAHGRGRTGEALT 63

Query: 233 LLDAAVARAPERAHYHT----------------------------------NLGVCRLGL 258
           L   A+A AP+ A                                      NLG  RL  
Sbjct: 64  LHGQALALAPQLAEAWCNRGDLLSDLGRLEEAEGDFVRACDLSPALLPAWFNLGNVRLRR 123

Query: 259 GDIKGAIAAHRQALALDPDEPEARYDLAWALLLAGAWEEGWAAHEARWRMGRFTGRRAAG 318
           GD   A   +R+A AL P  P     LA  L   G  E    A EA WR+          
Sbjct: 124 GDTAQAEPCYRRAAALAPHLPLIHAQLARCLDAMGQAEGAADAMEAAWRL---------- 173

Query: 319 PAPTDW 324
            AP DW
Sbjct: 174 -APDDW 178