Pairwise Alignments

Query, 288 a.a., 16S rRNA dimethylase (NCBI) from Rhodospirillum rubrum S1H

Subject, 267 a.a., Ribosomal RNA small subunit methyltransferase A from Pseudomonas putida KT2440

 Score =  174 bits (441), Expect = 2e-48
 Identities = 110/253 (43%), Positives = 143/253 (56%), Gaps = 6/253 (2%)

Query: 30  ARRSLGQNFLFDLNLTGRIARAGGEIDQGTVIEIGPGPGGLTRALLGAGARRVIAIERDS 89
           AR+  GQNFL D  +  RI RA        ++EIGPG G LT  LLG+GA+  + +E D 
Sbjct: 9   ARKRFGQNFLHDAGIIDRILRAINAKAGEHLLEIGPGQGALTEGLLGSGAQLDV-VELDK 67

Query: 90  RCRGVLAEIAAVWPGRLETIEGDALDIDVAALGEAPR--RVIANLPYNVATPLLIGWLRH 147
               +L    A         +GDAL  D   LG  PR  +V+ NLPYN++TPL+   L H
Sbjct: 68  DLVPILQHKFAD-RSNFRLHQGDALKFDFNQLGVPPRSLKVVGNLPYNISTPLIFHLLSH 126

Query: 148 ASAFERFVLMFQKEVVDRLAARPGTKDYGRLSVITQWLCEVRPLFDVNPRAFTPPPKVVS 207
           A        M QKEVV+R+AA PG  D+GRLS++ Q+ C V  LF+V P AF PPPKV S
Sbjct: 127 AGLIRDMHFMLQKEVVERMAAGPGGGDWGRLSIMVQYHCRVEHLFNVGPGAFNPPPKVDS 186

Query: 208 TVVRIDPRPQPLAPARME-TLERVTAAAFGQRRKMLRASLKALGDAEGLCAAAGLDPTAR 266
            +VR+ P      PA+    LERV   AF QRRK LR ++K L D+  +  AAG+D + R
Sbjct: 187 AIVRLVPHEVLPFPAKDHLLLERVVREAFNQRRKTLRNTMKGLLDSAAI-EAAGVDGSLR 245

Query: 267 AETIPVEGFAALA 279
            E + +  F  LA
Sbjct: 246 PEQLDLAAFVRLA 258