Pairwise Alignments

Query, 334 a.a., Periplasmic binding protein/LacI transcriptional regulator (NCBI) from Rhodospirillum rubrum S1H

Subject, 309 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  164 bits (415), Expect = 3e-45
 Identities = 116/337 (34%), Positives = 173/337 (51%), Gaps = 42/337 (12%)

Query: 1   MKKLLLTACAAAALLSASAAMAADAPKARIAVLMYGNKAEFVQLMER----YGKEHPAVK 56
           MKK ++      A +S     AA A    +++ ++ +   F+ ++      Y KE   V 
Sbjct: 1   MKKFII-----GAAMSVLLGTAAHAETVGVSMALFDDN--FLTVLRNGMLDYSKELKGVT 53

Query: 57  AGIAEVTFYDGRYDAAVQNDQAQMAINTKQDAIVVNPMDYEANIDIATNAKMAGIPVVVT 116
             +      D + D A Q  Q Q  I +K DAI+VNP+D +A   ++  A  A IP+V  
Sbjct: 54  LQVE-----DAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYV 108

Query: 117 NAR-LNTDEMT---AEVVSDDVLGGYLEAKDVLTKLGCKGNVVIIEGPKGGSGEIQRGQG 172
           N + +N D +    A V SD+ + G LEAK+V   LG KGN VI+ G         R Q 
Sbjct: 109 NRQPVNVDSLPDGQAFVASDETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQS 168

Query: 173 NEKALAECPAGAVKVLERKTANWSRAEALDLMQNWLSKHPGKINGVIGQNDEMALGAIEA 232
            +  L       + V+E +TANW R +  DL+ NWLS    + N VI  NDEMA+GAI+A
Sbjct: 169 AKDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSSGI-EFNAVIANNDEMAIGAIQA 227

Query: 233 IKAADLNVKDFAIAGIDGVTDALHAVKAGEM-TSILQDARGQIQGSIDVALRAVKGPDYK 291
           +KAA  ++K + +AG+D   DAL A++AG++  ++ QDA GQ +G++D AL+ VKG    
Sbjct: 228 LKAAGKDMKSYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKG---- 283

Query: 292 PMSPIWEQYKADLAWADGQSKRYDIPWTVVTTANVDE 328
                           D   K+  IP+ +VT  NV +
Sbjct: 284 ----------------DKIEKKVYIPFQLVTPENVKD 304