Pairwise Alignments

Query, 454 a.a., tRNA/rRNA cytosine-C5-methylase (NCBI) from Rhodospirillum rubrum S1H

Subject, 454 a.a., Ribosomal RNA small subunit methyltransferase B from Xanthobacter sp. DMC5

 Score =  368 bits (945), Expect = e-106
 Identities = 207/449 (46%), Positives = 273/449 (60%), Gaps = 10/449 (2%)

Query: 4   AARVQCAIDLLVDIDATNRPADGIASAFVRARRFMGSKDRRAVTALAWSTLRHRARLSWL 63
           AA +Q  +DL  ++DA  RPAD + S F R RR + +  R  ++ L +  LRH ARL W 
Sbjct: 16  AAILQATLDLTEEVDAVARPADAVVSDFFRTRRDIPAPQRGPISELLYILLRHHARLGWW 75

Query: 64  IDRFGGTPKARALVIAHLLVVERQSAEDVRMLFITRAQHAPQPLTDAEERLVDGLAGKPL 123
           + R G     R  ++A L++   ++ + V+ LF +  +  P PLTD E  L+  L G  +
Sbjct: 76  LKRHGRPDTPRNRLLAWLVLGAGKTRDQVQALF-SGVKFGPAPLTDQERALLVKLQGARI 134

Query: 124 EFREMPADVRLEVPDWLPPLLEPLFGERLEDELRALQAEAPLDLRVNALKSDRESARLAL 183
           +   MP DVR E P+W    L   FGE    E+ A+   APLDLRVN +K+DR     AL
Sbjct: 135 DHPSMPEDVRYECPEWGAEGLHRRFGEDFPQEMAAMLTPAPLDLRVNPIKADRVQMLSAL 194

Query: 184 AREQVDTRPGALSPCALRAEGRPNVAITAPFCDGLVEVQDEGSQMVALLCAVAPGMSVLD 243
               +      LSP  +R   RP +   A    G +E+QDEGSQ+VA++    PG  V+D
Sbjct: 195 RALGLPAELSPLSPYGIRVNERPALNRLAMLKTGELEIQDEGSQLVAVVVDAKPGERVVD 254

Query: 244 LCAGAGGKTLALAAGMENKGTLVATDISEGRLARAQTRLQRAGVHNVTRKVLDPETRKWL 303
            CAGAGGKTLA+AA M+NKG ++A D+ E RL RA  R +RAG+HN+  + L  ET +W+
Sbjct: 255 FCAGAGGKTLAIAAQMKNKGHVIACDVLENRLKRAAERFRRAGLHNIETRPLASETDRWV 314

Query: 304 KRRKASFDVVLVDAPCSGTGTWRRNPDARWKLTPDTISALNAEQSALLDRAAALVKPGGR 363
           KR K  FD VLVDAPCSGTGTWRRNPDARW++    + AL   Q+ +L  AA LVKPGGR
Sbjct: 315 KRHKGGFDRVLVDAPCSGTGTWRRNPDARWRVLGPGLDALLPLQARILASAARLVKPGGR 374

Query: 364 LVYATCSLLPAENEAQIAAFLERRDDYRALPVAETWAKVSPAPYPGAADVSWLRLTPASH 423
           LVYATCSLL  ENE Q+AAFL     +R +P++E   +++     G+A   +L LTPA H
Sbjct: 375 LVYATCSLLAEENEEQVAAFLAAHPAFRVVPLSEVAPQIT-----GSAHPDYLALTPARH 429

Query: 424 GTDGFFVSILERQPRETADQPDETAPIPE 452
            TDGFF ++LE   RE A  P E APIPE
Sbjct: 430 DTDGFFAAVLE---REAAPIP-EAAPIPE 454