Pairwise Alignments

Query, 688 a.a., type II secretion system protein E (NCBI) from Rhodospirillum rubrum S1H

Subject, 598 a.a., putative Type II secretion system protein from Pseudomonas putida KT2440

 Score =  278 bits (710), Expect = 7e-79
 Identities = 204/599 (34%), Positives = 306/599 (51%), Gaps = 46/599 (7%)

Query: 102 EKADSLAHSAPPPPTTARRAAAPPALVPALGLGDQLLAGGLISRDQMRV--------AHI 153
           E  D+   SA P PT++R A   P  V +    D  +  G+ +++  ++        A  
Sbjct: 3   EAFDATPESAKPAPTSSR-ACPLPQDVCSPQTCDVPVGAGMPAKNPAKISAYPRDLLAQA 61

Query: 154 EQKRSGAPLGQVLVDLGFITDGVLAEVLAQSSGHDRFDAASTLA-----DPAALAPLPER 208
             + +   L   L  L   T       L  +  +   D+ S LA     D  ALA   +R
Sbjct: 62  RLQATDERLLDCLERLACDTPDTFTRRLGLTLHYPVLDSHSLLASTPRFDKLALAQCLKR 121

Query: 209 EARRLRVFPVGLRGSLLRLAMVDPLD---VVAIDEVRRHYGRDVRIEPVVSSEAEIAQAI 265
           E   +       +G  L     DP D   +  ID+V +  G  + +    +  A++A  +
Sbjct: 122 ECVLIE------QGGQLLGVFADPFDPARLAWIDDVLQ--GAPLYL----AHAADLATFL 169

Query: 266 DRSYGHVLALDGVLRELETLGAAGADP------ESLRDTDSHPVVRLVNALLLDAVKRRA 319
            R      A+D +  + E   ++  DP       S+ +  S  VV+LVN+ L DA+K  A
Sbjct: 170 ARHEESFHAVDALDHDAEA--SSEGDPLQRLSLASISEDQSR-VVKLVNSTLYDALKLHA 226

Query: 320 SDLHFEPQGAFLRVRLRIDGTLSQT-LIFHKQYWPAVAQRLKILAGMNIADRLGPQDGRF 378
           SD+H    G  L ++ RIDG L+         +   V  R+K++A ++I ++  PQDGRF
Sbjct: 227 SDIHLGMTGQGLTIKYRIDGVLNGAGKASGSAFADQVISRIKVMAELDIGEKRVPQDGRF 286

Query: 379 SMAIAHRKIDFRASVIPTVHGENMVLRVLDRS-----ATPLKLEQLALAHGTLDPLELLV 433
            +A+  R+IDFR S++P++ GE+ VLRVLD+       + ++L+ L  A  TL  L  L 
Sbjct: 287 KVAVGDRQIDFRVSIMPSIFGEDAVLRVLDKQDLSDRVSGVQLQALGFADETLRALRRLA 346

Query: 434 RRPEGLLLVTGPTGSGKTTTLYALMDHISGPEITIVTLEDPVEYDLPLLRQTQVREGARL 493
             P G++LVTGPTGSGKTTTLYA++  I+     I+T+EDPVEY LP + Q  V E   L
Sbjct: 347 AEPYGMILVTGPTGSGKTTTLYAMISEINHGVDKIITIEDPVEYQLPGVLQIPVNEKKGL 406

Query: 494 GFADGIRALLRQDPDVMLVGEIRDADTAAMALRAAMTGHQVYATLHANDAPSALPRLMDL 553
            FA G+R++LR DPD +LVGEIRD DTA +A+++A+TGH V+ T+HAN+    + R   +
Sbjct: 407 TFARGLRSILRHDPDKILVGEIRDPDTAQIAVQSALTGHLVFTTIHANNVFDVIGRFSQM 466

Query: 554 GLRPGLLAGSLIGVLAQRLVRRLCPHCRQSYRASPVECKILGL--DATDPPEIFRARGCE 611
            + P     +L  VLAQRL+R  CPHC              GL  +        R +GC 
Sbjct: 467 QVDPYSFVSALNAVLAQRLIRLACPHCATPCEHDDDTLYGSGLTREGVAGWTFVRVKGCG 526

Query: 612 ACGQTGYHGRVPISELLSISPEIDDLIASAAPLAEIRALATRQGYRPMLDDGARLVCEG 670
            C  +GY GR  I+ELL +  ++  +I    PLA+I+ LA ++G R +      LV +G
Sbjct: 527 HCRGSGYRGRSAIAELLHLDDDLRQMIVERRPLAQIKTLACQRGLRLLRASALDLVRDG 585