Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 441 a.a., HlyD family type I secretion periplasmic adaptor subunit from Pseudomonas fluorescens SBW25

 Score =  291 bits (744), Expect = 4e-83
 Identities = 161/426 (37%), Positives = 250/426 (58%), Gaps = 4/426 (0%)

Query: 67  DSRQTIRAGWLIILVAFGGLGLWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEIL 126
           D ++  R GWL++L  F G   WAA APL   V   G ++V  +RKTVQH  GGI++ I 
Sbjct: 20  DDKKYSRIGWLLVLGGFAGFLGWAALAPLDKGVAVSGKVMVSGHRKTVQHPAGGIVERID 79

Query: 127 VKEGDRVHQGDPLIRLETTQALASAAVVSNQFETYQALEARLVAERDEQKTITFPPDLIA 186
           V++G+ V  G  L+RL+ T        + +Q+    A EARL AE +    ITF P+L+ 
Sbjct: 80  VRDGEVVSAGQVLLRLKETPLRGQMQSLRSQYVASLASEARLSAESEGLSAITFAPELLD 139

Query: 187 VAKLKPETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQLEI 246
                PE A  L  Q+Q F+ R +++  +   L++ IA +  ++ G +  + SK +Q   
Sbjct: 140 ----DPEAAATLNLQRQLFNSRAQALATEQQGLRETIAGAEAQLRGTRDSQASKVQQRAA 195

Query: 247 FQDEIVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAELQIIQT 306
             +++ GLR L   GY PR R+L  ER  ++++G +  D   + + ++ V E  L+I   
Sbjct: 196 LSEQLQGLRALARDGYIPRNRLLDSERLYSQVDGAIAEDYGRIGQLQRQVLELRLRIRHL 255

Query: 307 RQQFREDVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGIIKP 366
            + F++D+ GQL E +T+  +LR R   A   L+ +++ A  +GV+  L V+T GG+IKP
Sbjct: 256 GEDFQKDLRGQLAETRTRSDDLRNRLASAEFELANSLVRAPASGVVVGLDVYTEGGVIKP 315

Query: 367 GETLMEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVSADR 426
           G+ LM+IVP+ + L++EA++  + +D V PG+  E+ FSAFN  T P + G ++ VSADR
Sbjct: 316 GQALMDIVPQGEPLLVEARVPVQMVDKVHPGLPVELLFSAFNQATTPRVAGEVTLVSADR 375

Query: 427 FVNERDSSSYYKARIEVSDEELAKLGGLALRAGMPVDVMIKTGERTVLHYFLKPLEDALF 486
            V+ER    YY  R +VS   + +L G+ +R GMPV+  IKTGER++L+Y  KPL D   
Sbjct: 376 QVDERTDEPYYTLRAQVSAAGMQQLDGVQIRPGMPVETFIKTGERSMLNYLFKPLLDRTH 435

Query: 487 HGLIEE 492
             L+EE
Sbjct: 436 MALVEE 441