Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 437 a.a., HlyD family type I secretion periplasmic adaptor subunit from Pseudomonas fluorescens SBW25

 Score =  272 bits (695), Expect = 2e-77
 Identities = 146/420 (34%), Positives = 237/420 (56%), Gaps = 2/420 (0%)

Query: 73  RAGWLIILVAFGGLGLWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVKEGDR 132
           R GWL+ LV  GG  LWA+ APL   +   GT+VV   RK VQ L  G++  ILVKEG+ 
Sbjct: 20  RMGWLLTLVGAGGFFLWASLAPLDQGIPVQGTVVVSGKRKAVQTLSPGVVSRILVKEGEH 79

Query: 133 VHQGDPLIRLETTQALASAAVVSNQFETYQALEARLVAERDEQKTITFPPDLIAVAKLKP 192
           V QG PL RL+ TQ  A    +  Q+    A  AR  +ERD   +I FP +L A     P
Sbjct: 80  VKQGQPLFRLDQTQHQADVQSLQAQYRMAWASVARWQSERDNHASIRFPAELSA--NPDP 137

Query: 193 ETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQLEIFQDEIV 252
             A +L+ Q+Q F  R ++   + A ++  I  +  ++ G++  R     Q +  +D++ 
Sbjct: 138 ALALVLEGQRQLFSSRREAFAREQAGIRANIDGASAQLGGMRRARSDLTAQAQSLRDQLS 197

Query: 253 GLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAELQIIQTRQQFRE 312
            L+ L   GY PR R++  +R++++++ ++  ++    R EQ + E+ L++ Q  +++++
Sbjct: 198 NLQPLADNGYIPRNRLMEYQRQLSQVQQDLAQNSGESGRVEQGILESRLKLQQHSEEYQK 257

Query: 313 DVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGIIKPGETLME 372
           +V  QL + Q +   L ++ T A   L  + + A   G+  NL+VHT G +++ GETL+E
Sbjct: 258 EVRSQLADAQLRSLTLEQQLTSAGFDLQHSEINAPADGIAVNLSVHTEGAVVRAGETLLE 317

Query: 373 IVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVSADRFVNERD 432
           IVP+  RL +E  +    +D V   +  ++ F+AFN    P + G +S +SAD+ ++E+ 
Sbjct: 318 IVPQGTRLEVEGHLPVHLVDKVGTHLPVDILFTAFNQSRTPRVPGEVSLISADQMLDEKT 377

Query: 433 SSSYYKARIEVSDEELAKLGGLALRAGMPVDVMIKTGERTVLHYFLKPLEDALFHGLIEE 492
            + YY  R  VSD  L KL GL ++ GMP ++ ++TGER++L+Y  KPL D     L EE
Sbjct: 378 GAPYYVLRTTVSDAALEKLHGLVIKPGMPAEMFVRTGERSLLNYLFKPLLDRAGSALTEE 437