Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 437 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  285 bits (730), Expect = 2e-81
 Identities = 162/424 (38%), Positives = 241/424 (56%), Gaps = 1/424 (0%)

Query: 69  RQTIRAGWLIILVAFGGLGLWAATAPLSSAVGAPGTIVVESNRKTVQHLEGGIIKEILVK 128
           R+ + AG         G+G WAAT  L+ AV A G +VV+S  K VQH +GG++ EILV 
Sbjct: 15  RKHLLAGLAAGAALLAGVGGWAATTNLAGAVVASGHLVVDSYTKKVQHPKGGVVGEILVN 74

Query: 129 EGDRVHQGDPLIRLETTQALASAAVVSNQFETYQALEARLVAERDEQKTITFPPDLIAVA 188
           EG+RV  GD ++RL+ TQ  A+ A+V+ + +   A  ARL AERD+   + FP  LIA  
Sbjct: 75  EGERVKAGDVVMRLDATQTRANLAIVTKRLDELGARMARLEAERDDLAELIFPQALIA-R 133

Query: 189 KLKPETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLKVQRQSKKRQLEIFQ 248
           +  P+ A  ++++ + F+ R    EG+ A L +RI Q   EIEGLK Q  +    L + +
Sbjct: 134 RDDPDVASAMRSETKLFEFRKSYREGRKAQLAERITQFEHEIEGLKAQEVAYDNGLAVLE 193

Query: 249 DEIVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQAVGEAELQIIQTRQ 308
            EI   + L  +G     R+ +++ +     GE G   +  A+    + E +LQI+Q  Q
Sbjct: 194 AEITSQKSLREQGVVSVQRLNSLQTQAATFGGERGEKIAYQAQTAGRITETKLQILQIDQ 253

Query: 309 QFREDVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQNLAVHTLGGIIKPGE 368
           + R +V  +LRE+Q ++ E  ER   A D L R  ++A Q+G++  +AVHT+GG++ P +
Sbjct: 254 ELRTEVGRELREIQAQMGEFVERKVAAEDELKRIDIVAPQSGMVHEMAVHTVGGVVTPAD 313

Query: 369 TLMEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPIIDGVLSQVSADRFV 428
            +M IVP+ D L +E QI P+DID +  G    +R +AFN R  P ++G +S+++AD   
Sbjct: 314 PIMLIVPDGDELALEVQIVPKDIDQLQVGQKAMLRMTAFNQRVTPELEGHVSRIAADITT 373

Query: 429 NERDSSSYYKARIEVSDEELAKLGGLALRAGMPVDVMIKTGERTVLHYFLKPLEDALFHG 488
           ++R   SYY ARI V   E  KL    L  GMP +  I+T ERT L Y  KPL D +   
Sbjct: 374 DQRTGLSYYLARISVPVSEREKLNNAPLVPGMPAEAFIQTSERTALSYIAKPLTDQISRA 433

Query: 489 LIEE 492
             EE
Sbjct: 434 FREE 437