Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 452 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  239 bits (611), Expect = 1e-67
 Identities = 145/440 (32%), Positives = 224/440 (50%), Gaps = 6/440 (1%)

Query: 48  DTTPARWTEGMLSIPKVVTDSRQTIRAGWLIILVAFGGLGLWAATAPLSSAVGAPGTIVV 107
           D  P    E    +P+ +   R     G  ++L +FGG G WA TAPLSSA+ A G+ V 
Sbjct: 10  DVKPQGQLEWYSEVPRSI---RLHSSIGLAVLLASFGGFGYWAGTAPLSSAIIAQGSFVA 66

Query: 108 ESNRKTVQHLEGGIIKEILVKEGDRVHQGDPLIRLETTQALASAAVVSNQFETYQALEAR 167
             N K VQHLEGGIIKE++V EGD V  GD L+ L+ T ALA+  +   +    + +  R
Sbjct: 67  TGNNKVVQHLEGGIIKEMMVSEGDTVKVGDVLLTLDKTTALANERMFQLRRLRLETIVTR 126

Query: 168 LVAERDEQKTITFPPDLIAVAKLKPETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSR 227
           L AE   +K+   P D++      P+   I+Q+Q   F  +   ++ Q+ ++ K I    
Sbjct: 127 LRAEAQGEKSFKVP-DIVMKEASDPDIKSIIQSQNVVFHSKLVKLDEQLNLINKNIKSLE 185

Query: 228 QEIEGLKVQRQSKKRQLEIFQDEIVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTS 287
               G   Q+QS  RQL +   E      L   G   +T +LA+ER +    G++   T 
Sbjct: 186 FRFAGYDGQKQSFDRQLALLTQERDSKERLAKDGVIRKTDMLALERAIADAMGDIARLTG 245

Query: 288 SMARAEQAVGEAELQIIQTRQQFREDVVGQLREVQTKLSELRERGTVATDVLSRTVLLAS 347
            M ++E  + + + + +      ++  +  L   ++ L  +RE+   A +VL RTV+ + 
Sbjct: 246 EMNQSEAEIAKFKQEAVIAVNANKQAALDALEIAESDLDSVREQVRGAAEVLERTVIRSP 305

Query: 348 QAGVIQNLAVHTLGGIIKPGETLMEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAF 407
             G +     HT GG+I  G+ +MEI+P    L++EAQ+    ID +  G    +R SA 
Sbjct: 306 VNGTVIRAYYHTPGGVITTGKPIMEILPAHVPLILEAQVLRTSIDQLHEGQTAAIRLSAL 365

Query: 408 NSRTIPIIDGVLSQVSADRFVNER--DSSSYYKARIEVSDEELAKLGGLALRAGMPVDVM 465
           N RT P+++G +  VSAD             Y  R+++SDEE+AK+       GMP DV+
Sbjct: 366 NRRTTPVLNGKVFYVSADSIEENAGLQVKDVYIVRVQISDEEIAKVHNFHPVPGMPADVL 425

Query: 466 IKTGERTVLHYFLKPLEDAL 485
           I+T ERT   Y  KP+ D++
Sbjct: 426 IQTSERTFFEYLTKPIADSM 445