Pairwise Alignments

Query, 492 a.a., Type I secretion membrane fusion protein, HlyD (NCBI) from Rhodospirillum rubrum S1H

Subject, 437 a.a., HlyD family secretion protein from Agrobacterium fabrum C58

 Score =  263 bits (672), Expect = 9e-75
 Identities = 154/438 (35%), Positives = 235/438 (53%), Gaps = 4/438 (0%)

Query: 58  MLSIPKVVTDSRQTIRAGWLIILVAFG---GLGLWAATAPLSSAVGAPGTIVVESNRKTV 114
           M    K  T +   +R    ++++  G   G+G WAA A L+ AV A G +VVE N K +
Sbjct: 1   MADAEKTGTTNSSILRHSAAVVVLGLGLLVGMGGWAAFAKLAGAVVATGRVVVEGNSKKI 60

Query: 115 QHLEGGIIKEILVKEGDRVHQGDPLIRLETTQALASAAVVSNQFETYQALEARLVAERDE 174
           QHL GGI+ EI V EGDRV  G  L+RL  T   A+ +++ N      +  ARL AE  E
Sbjct: 61  QHLSGGIVSEINVVEGDRVAAGQILLRLSATVVQANLSIIENTLAQLYSRRARLRAEIAE 120

Query: 175 QKTITFPPDLIAVAKLKPETAEILQAQQQQFDERHKSIEGQVAILQKRIAQSRQEIEGLK 234
           + + T   DL A+   K      + ++Q  F+ R  ++ G    L  R  Q   E  GL 
Sbjct: 121 EPSFTVTEDLTALTSSK-SAKTFIDSEQNLFNSRRNALIGMKKQLATRKLQLADEARGLD 179

Query: 235 VQRQSKKRQLEIFQDEIVGLRELLAKGYTPRTRILAMEREMTRLEGEVGTDTSSMARAEQ 294
           VQ ++ + +L I ++++    ELL KG     R+  ++R+++ LEG+ G   ++ A+   
Sbjct: 180 VQVEATENELAIVKEDVSKTDELLKKGLVTLQRLNLLKRQLSNLEGQQGQYIAARAQTVG 239

Query: 295 AVGEAELQIIQTRQQFREDVVGQLREVQTKLSELRERGTVATDVLSRTVLLASQAGVIQN 354
            + E +LQ++Q  +  + +V   L  ++  ++E  ER     D L R  + +  AG I  
Sbjct: 240 KLSELDLQLLQLDEDRKSEVTKDLTSIEATVAEYEERLAATRDQLDRLDIRSPIAGRIYQ 299

Query: 355 LAVHTLGGIIKPGETLMEIVPEDDRLVIEAQISPRDIDNVVPGMDTEVRFSAFNSRTIPI 414
           L+VH + G+I+PGE LM +VP+ D L IEA I+PRDID +  G    VRF+AFN  T P 
Sbjct: 300 LSVHNINGVIQPGEVLMLVVPDKDDLAIEANITPRDIDQIYVGQPVTVRFTAFNQSTTPD 359

Query: 415 IDGVLSQVSADRFVNERDSSSYYKARIEVSDEELAKLGGLALRAGMPVDVMIKTGERTVL 474
           +   ++ V+ D   + R  +SYY  RI  +   +  L G  L  GMP +V I+T ER+VL
Sbjct: 360 LSAEVAVVAPDLQTDSRTGTSYYVLRIRPNKAGMGHLPGGKLYPGMPAEVFIQTSERSVL 419

Query: 475 HYFLKPLEDALFHGLIEE 492
            YF+KP +D L    ++E
Sbjct: 420 SYFVKPFQDRLKKTFVQE 437