Pairwise Alignments

Query, 333 a.a., peptidoglycan DD-metalloendopeptidase family protein from Rhodanobacter denitrificans MT42

Subject, 379 a.a., predicted outer membrane lipoprotein (NCBI) from Escherichia coli BW25113

 Score =  181 bits (460), Expect = 2e-50
 Identities = 117/278 (42%), Positives = 146/278 (52%), Gaps = 19/278 (6%)

Query: 57  GGSYAVAKGDTLYSIAFRKGVDFRDLAQWNGIAAPYTIWPGQRLTLSPPAGRAAAPPAAA 116
           G +Y V KGDTL+ IA+  G DFRDLAQ N I APY +  GQ L +   +G         
Sbjct: 120 GSTYTVKKGDTLFYIAWITGNDFRDLAQRNNIQAPYALNVGQTLQVGNASG--------T 171

Query: 117 PVHAGGASVRAAGASASSAPATSAPVFEPVAAPASPSAAPSVEVPGTATANVPPRPVAPA 176
           P+  G A  +A    A+       P      A AS       E  G  +AN    P    
Sbjct: 172 PITGGNAITQA---DAAEQGVVIKPAQNSTVAVASQPTITYSESSGEQSAN-KMLPNNKP 227

Query: 177 VAATSVVPVAGVPTAAPASMPPPAPAAAGVSRVVSHVQWRWPADGSLVGRFQSGDA-IPG 235
            A T   PV  VPTA   S   P  ++   S  +S   WRWP +G ++  F + +    G
Sbjct: 228 TATTVTAPVT-VPTA---STTEPTVSSTSTSTPIS--TWRWPTEGKVIETFGASEGGNKG 281

Query: 236 IEIAGKSGDPVRAAADGVVVYSGNGLVGYGELVIIKHSDSFLSAYGHNSKRLVKEGQRVS 295
           I+IAG  G  + A ADG VVY+GN L GYG L+IIKH+D +LSAY HN   LV+E Q V 
Sbjct: 282 IDIAGSKGQAIIATADGRVVYAGNALRGYGNLIIIKHNDDYLSAYAHNDTMLVREQQEVK 341

Query: 296 MGQQIAEMGSTGTTRNELEFQIRKDGNPVDPLGYLPGR 333
            GQ+IA MGSTGT+   L F+IR  G  V+PL YLP R
Sbjct: 342 AGQKIATMGSTGTSSTRLHFEIRYKGKSVNPLRYLPQR 379