Pairwise Alignments

Query, 375 a.a., efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum UW163

Subject, 372 a.a., HlyD family secretion domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 88.2 bits (217), Expect = 3e-22
 Identities = 99/367 (26%), Positives = 167/367 (45%), Gaps = 36/367 (9%)

Query: 9   ALAAFLAVAGIALWRLAPTAPAHA---ETQVPPAALAVSLTEPKRLDWPDTIEANGTTTA 65
           A+ AF +V G  L   +  A A A   E + P  A+A+ + +     W  TI+A G    
Sbjct: 12  AVLAFGSVIGFNLMVKSKIADAIANMPEAEFPVTAMALEMQK-----WQPTIDAIGFVEP 66

Query: 66  WQEAVIGAETGSLRITELLADVGSTVKRGQVLARLADATATADLRKQEAAVAQARANLEQ 125
            Q   I  E    R+T +  + GS V++GQ+LA L       D + + A +      L  
Sbjct: 67  HQGVTISNELAG-RVTSINFENGSRVEKGQLLAEL-------DAKVERANLKSKMVQLPA 118

Query: 126 AQADLKR-SKLAADSGALSAQKLDEYRITEAVDRAALASAEAELQSKRITVSQTRIVAVD 184
           A+AD KR SKL A   ++S Q LD          +   + +A+++S + T+ +  I A  
Sbjct: 119 AEADFKRLSKLYAQK-SVSKQDLDN-------SESKYLALQADIESLKATIERREISAPF 170

Query: 185 DGVISSRSALLGNVVSAGTELFRLIRQGRVEWQAEVDAQQLTRIQPGQPAHVTLPT--GK 242
            G++  R+  LG  +  GT++ RL     ++ +  +   QL RI  GQ  HV + +   +
Sbjct: 171 SGLVGIRNINLGEYLQPGTDIVRLEDISTMKIRFTIPQTQLPRIAVGQKIHVFVDSYPEQ 230

Query: 243 TADGKVRLVSPTLSTSTGRAIVYVAL--DGRDAQPGMFAGGRIELAS-RPALTVPESALV 299
             +G++  + P +   +G   V   +  D    + GMFA   I L        +P++A+ 
Sbjct: 231 PFEGEIAAIEPAVFYQSGLIQVQARIPNDNAKLRSGMFARVSILLPELNDQFVLPQTAIN 290

Query: 300 PRDGRTDVYVL---NSDGVSVAR--RTVATGRRRDGRVEVTTG-LNADARVVASGGGFLS 353
                  +Y++     +G  +AR  +   T   R+G   + +G L A  R+V SG   LS
Sbjct: 291 FTLYGNSIYLIKDVEENGKKLARVEQINLTVLERNGNNALVSGALKAGDRIVTSGQIRLS 350

Query: 354 DGARVRV 360
           + ++V V
Sbjct: 351 NNSKVTV 357