Pairwise Alignments

Query, 375 a.a., efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum UW163

Subject, 435 a.a., conserved hypothetical protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 98.2 bits (243), Expect = 4e-25
 Identities = 91/325 (28%), Positives = 156/325 (48%), Gaps = 19/325 (5%)

Query: 41  LAVSLTEPKRLDWPDTIEANGTTTAWQEAVIGAETGSLRITELLADVGSTVKRGQVLARL 100
           + V++   K   + D ++  G   A   A++     S +I+ +    G  V +GQV+A  
Sbjct: 58  IPVTVEAVKEASFADVVKEVGKINAIDSAILSFNA-SEKISAIHFSNGDKVTKGQVIAEQ 116

Query: 101 ADATATADLRKQEAAVAQARANLEQAQADLKRSKLAADSGALSAQKLDEYRITEAVDRAA 160
            +  A ADL K ++ +A A+  LE+ + DL    L  +  AL+ Q +DE R  E V+ A 
Sbjct: 117 DNTKAKADLDKAKSTLALAKTKLERIE-DL----LIKEPFALAKQDVDELR--ENVNLA- 168

Query: 161 LASAEAELQSKRITVSQTRIVAVDDGVISSRSALLGNVVSAGTELFRLIRQGRVEWQAEV 220
               +A+ + K+ T++   I A  DG ++S S  +G+ ++AGT L  L     VE +  +
Sbjct: 169 ----DADFRQKQATMNDYLIKAPFDGQLTSFSQSIGSQIAAGTALVTLYSLNPVEVRYAI 224

Query: 221 DAQQLTRIQPGQPAHVTLPT--GKTADGKVRLVSPTLSTSTGRAIVYVALDGRDAQ--PG 276
                 + Q GQ  +VT+     K   G V  V+P +  S+GR  V+ ALD  + +  PG
Sbjct: 225 SQHDFGKAQKGQGVNVTVEAYANKVFKGTVNYVAPAVDESSGRVEVHAALDNSEFKLAPG 284

Query: 277 MFAGGRIELASRPA-LTVPESALVPRDGRTDVYVLNSDGVSVARRTVATGRRRDGRVEVT 335
           MFA  +   +   A L VP+++++  +    V+++  +  +V +         DG   VT
Sbjct: 285 MFANIKQFYSQGVACLLVPQNSIIANNDERFVWLVRGNN-AVKQIIKLAQNTNDGYTVVT 343

Query: 336 TGLNADARVVASGGGFLSDGARVRV 360
            GL     VV +G   L   +++ V
Sbjct: 344 EGLAKGDLVVKTGMQNLKSDSQINV 368