Pairwise Alignments

Query, 375 a.a., efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum UW163

Subject, 354 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 98.2 bits (243), Expect = 3e-25
 Identities = 97/314 (30%), Positives = 147/314 (46%), Gaps = 27/314 (8%)

Query: 62  TTTAWQEAVIGAETGSLRITELLADVGSTVKRGQVLARLADATATADLRKQEAAVAQARA 121
           T  A QEA + +    L I  +  + G  VK+GQ LA +       DL + EA V     
Sbjct: 57  TLEAPQEANVVSRIAGL-IEVINVEEGDRVKKGQSLAIIDAKRQQYDLDRSEAEVKIIEQ 115

Query: 122 NLEQAQADLKRSKLAADSGALSAQKLDEYRITEAVDRAALASAEAELQSKRITVSQTRIV 181
            L + +    +  ++ADS A    KL EY +  A+ R  LA    ELQ     V ++ +V
Sbjct: 116 ELNRLKKMNNKEFISADSMA----KL-EYNLQAAIARRDLA----ELQ-----VKESHVV 161

Query: 182 AVDDGVISSRSALLGNVVSAGTELFRLIRQGRVEWQAEVDAQQLTRIQPGQPAHV--TLP 239
           +  DG+I+ R    GN+     +LF ++ Q  +     +  QQLT ++ GQ A V     
Sbjct: 162 SPIDGIIAKRYVKAGNMAKEFGDLFYIVNQDELHGIVHLPEQQLTSLRLGQEAQVFSNQQ 221

Query: 240 TGKTADGKVRLVSPTLSTSTGRAIVYVALDGRDA--QPGMFAGGRIEL---ASRPALTVP 294
           +    + KV  +SP +   +G   V +A+  +DA  + GMF   R+EL        +TVP
Sbjct: 222 SKNAINAKVLRISPVVDPQSGTFKVTLAVPNQDARLKAGMFT--RVELKYDTHENVITVP 279

Query: 295 ESALVPRDGRTDVYVLNSDGVSVARRTVATGRRRDGRVEVTTGLNADARVVASGGGFLSD 354
            SAL+ +D +  +YV+   G +  RR V  G R    VE+ +G+     VV  G   L D
Sbjct: 280 YSALINQDNKQALYVI--AGTNANRREVEIGYREGDAVEIVSGIKPGEVVVTRGQQNLKD 337

Query: 355 GARVRV-APSTVAS 367
            + V V  P  +AS
Sbjct: 338 QSLVEVITPLDLAS 351