Pairwise Alignments

Query, 375 a.a., efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum UW163

Subject, 360 a.a., HlyD family-related protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  105 bits (263), Expect = 1e-27
 Identities = 93/350 (26%), Positives = 162/350 (46%), Gaps = 27/350 (7%)

Query: 5   RRMAALAAFLAVAGIALWRLAPTAPAHAETQVPPAAL--AVSLTEPKRLDWPDTIEANGT 62
           +++  + A LA A      + P   A  + ++PP  +  A ++ + +     D +EA GT
Sbjct: 2   KKIIIIIAILAAAWFGYQAMQPQEQAKVQVKLPPNVVIAAAAMAQVR-----DEVEAIGT 56

Query: 63  TTAWQEAVIGAETGSLRITELLADVGSTVKRGQVLARLADATATADLRKQEAAVAQARAN 122
             A++   I  +   + +T L  D G  VK+G +L +L +A       +Q A V  A+  
Sbjct: 57  NKAYESVTITPKVTDV-VTSLKFDDGDIVKKGDLLVQLQNA-------EQLAKVKVAQVK 108

Query: 123 LEQAQADLKRSKLAADSGALSAQKLDEYRITEAVDRAALASAEAELQSKRITVSQTRIVA 182
           +   Q +L R      S  ++  +L+  R+   +D     +  AEL+  + +++   IVA
Sbjct: 109 VSDNQRELARISSLVTSRTVA--ELERDRLQTLID-----TTRAELEQAQSSLNDRSIVA 161

Query: 183 VDDGVISSRSALLGNVVSAGTELFRLIRQGRVEWQAEVDAQQLTRIQPGQ--PAHVTLPT 240
             +G +  R   +G++V+ GTE+  L    +++    V  + +  +QPG+   A      
Sbjct: 162 PFNGRLGLRQVSVGSLVTPGTEISTLDDISKIKLDFSVPERFIQELQPGKLVEAKAVAFP 221

Query: 241 GKTADGKVRLVSPTLSTSTGRAIVYVALDGRDAQ--PGMFAGGRIELASRPALTVPESAL 298
            +   GKV  +   ++ +T   IV   +   D +  PGM    ++   SR AL +PESA+
Sbjct: 222 DEIFKGKVISIDSRVNPTTRAVIVRAEIPNHDLRLLPGMLMKVKLIKRSREALMLPESAI 281

Query: 299 VPRDGRTDVYVLNSDGVSVARRTVATGRRRDGRVEVTTGLNADARVVASG 348
           +P      VY +N D V + R+ V  G R  G VE+T GL     VV  G
Sbjct: 282 IPIQKSHFVYSVNKDNV-IERKQVTIGIRTRGWVEITDGLAIGENVVIRG 330