Pairwise Alignments

Query, 370 a.a., efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum UW163

Subject, 372 a.a., HlyD family secretion domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 97.1 bits (240), Expect = 7e-25
 Identities = 86/361 (23%), Positives = 165/361 (45%), Gaps = 23/361 (6%)

Query: 14  RKYLIPVALSAVVTAAAILFF---APRTAATAMPEQPAAALTVTVAAASQTQWPATLEAS 70
           +K+ + +   AV+   +++ F        A A+   P A   VT  A    +W  T++A 
Sbjct: 2   KKWTLSMLAIAVLAFGSVIGFNLMVKSKIADAIANMPEAEFPVTAMALEMQKWQPTIDAI 61

Query: 71  GAIAPWQEAVIGAQVSGLRLADVRVNVGDQVKRGQILAVFDADLLRADEARLKAGWQQAE 130
           G + P Q   I  +++G R+  +    G +V++GQ+LA  DA + RA+          AE
Sbjct: 62  GFVEPHQGVTISNELAG-RVTSINFENGSRVEKGQLLAELDAKVERANLKSKMVQLPAAE 120

Query: 131 ANRERALKLKGSGGISEQDVLQYVTQADVSKAQLRSTQLQLRYAEVIAPDDGVISARSAT 190
           A+ +R  KL     +S+QD+    ++    +A + S +  +   E+ AP  G++  R+  
Sbjct: 121 ADFKRLSKLYAQKSVSKQDLDNSESKYLALQADIESLKATIERREISAPFSGLVGIRNIN 180

Query: 191 VGTVSNTGQELFRMIRQSRLEWRGELTAAQLAQMKAGQRIRLALPD--GTAATAMVRQTA 248
           +G     G ++ R+   S ++ R  +   QL ++  GQ+I + +           +    
Sbjct: 181 LGEYLQPGTDIVRLEDISTMKIRFTIPQTQLPRIAVGQKIHVFVDSYPEQPFEGEIAAIE 240

Query: 249 PSLDGQTRLGIVYADIEPGSGA--RAGMYAKGNVVLAQ-SPAVTVPAVSV---------- 295
           P++  Q+ L  V A I P   A  R+GM+A+ +++L + +    +P  ++          
Sbjct: 241 PAVFYQSGLIQVQARI-PNDNAKLRSGMFARVSILLPELNDQFVLPQTAINFTLYGNSIY 299

Query: 296 VIRDGRSYVPKLSGADRVALQAVTVGRRQGDAVEIVSGIVPGDKVVVQGAAFLNDGDVVR 355
           +I+D      KL+  +++ L   TV  R G+   +   +  GD++V  G   L++   V 
Sbjct: 300 LIKDVEENGKKLARVEQINL---TVLERNGNNALVSGALKAGDRIVTSGQIRLSNNSKVT 356

Query: 356 V 356
           V
Sbjct: 357 V 357