Pairwise Alignments

Query, 370 a.a., efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum UW163

Subject, 369 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 86.3 bits (212), Expect = 1e-21
 Identities = 86/338 (25%), Positives = 140/338 (41%), Gaps = 8/338 (2%)

Query: 20  VALSAVVTAAAILFFAPRTAATAMPEQPAAALTVTVAAASQTQWPATLEAS--GAIAPWQ 77
           +A++ + T A  + F+    A      P    TV V      + P     S  G +A  +
Sbjct: 6   IAIALIATVATAVSFSDVLQAAKPESAPQPMRTVPVVTGEVVEHPLAQSVSLIGKLAADR 65

Query: 78  EAVIGAQVSGLRLADVRVNVGDQVKRGQILAVFDADLLRADEARLKAGWQQAEANRERAL 137
             VI  QV+G ++  + V     VK+GQ+L   D    +A  A   A         +   
Sbjct: 66  AVVIAPQVTG-KIKQIAVVSNQAVKKGQLLIELDDMKAQAAVAEANAFLNDETRKLKEFE 124

Query: 138 KLKGSGGISEQDVLQYVTQADVSKAQLRSTQLQLRYAEVIAPDDGVISARSATVGTVSNT 197
           KL     I++ ++       D+++A+L S Q  L Y  +IAP  G     + + G + +T
Sbjct: 125 KLISRNAITQTEIDAQKASVDIARARLASAQADLHYHSLIAPFAGQTGLINFSEGKMVST 184

Query: 198 GQELFRMIRQSRLEWRGELTAAQLAQMKAGQRIRLALPDGTAATAMVRQTA--PSLDGQT 255
           G EL  +   S +    ++    L+Q+  G  +          T + +  A  P ++ +T
Sbjct: 185 GNELMTLDDLSSMRLDLQVPEHFLSQISIGMPVSSTSRAWPGETFIGKVVAIDPRVNEET 244

Query: 256 -RLGIVYADIEPGSGARAGMYAKGNVVLAQSPAVTVPAVSVVIRDGRSYVPKLSGADRVA 314
             L I        +  + GM     +      A  VP  ++     + YV  + G D +A
Sbjct: 245 LNLKIRVQFENTDNRLKPGMMMSSTITFPPISAPIVPVQALEYSGTKRYV-YVVGEDHIA 303

Query: 315 LQA-VTVGRRQGDAVEIVSGIVPGDKVVVQGAAFLNDG 351
            +  V +G R GD V I SG+  GDKVVVQG   + DG
Sbjct: 304 HRTEVILGARVGDQVLIDSGLKIGDKVVVQGLVNMRDG 341