Pairwise Alignments

Query, 370 a.a., efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum UW163

Subject, 354 a.a., HlyD family secretion protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  121 bits (304), Expect = 3e-32
 Identities = 101/355 (28%), Positives = 174/355 (49%), Gaps = 18/355 (5%)

Query: 15  KYLIPVALSAVVTAAAILFFAPRTAATAMPEQPAAALTVTVAAASQTQWPATLEASGAIA 74
           K+ +PV L +++ A      A +    A+P +    +   V++   T   ATLEA     
Sbjct: 8   KFALPVLLVSMLAACGEEEVAKKEEKYAIPVETTTVIQGNVSSFYSTT--ATLEAP---- 61

Query: 75  PWQEAVIGAQVSGLRLADVRVNVGDQVKRGQILAVFDADLLRADEARLKAGWQQAEANRE 134
             QEA + ++++GL +  + V  GD+VK+GQ LA+ DA   + D  R +A  +  E    
Sbjct: 62  --QEANVVSRIAGL-IEVINVEEGDRVKKGQSLAIIDAKRQQYDLDRSEAEVKIIEQELN 118

Query: 135 RALKLKGSGGISEQDV--LQYVTQADVSKAQLRSTQLQLRYAEVIAPDDGVISARSATVG 192
           R  K+     IS   +  L+Y  QA +++  L   +LQ++ + V++P DG+I+ R    G
Sbjct: 119 RLKKMNNKEFISADSMAKLEYNLQAAIARRDL--AELQVKESHVVSPIDGIIAKRYVKAG 176

Query: 193 TVSNTGQELFRMIRQSRLEWRGELTAAQLAQMKAGQRIRL--ALPDGTAATAMVRQTAPS 250
            ++    +LF ++ Q  L     L   QL  ++ GQ  ++        A  A V + +P 
Sbjct: 177 NMAKEFGDLFYIVNQDELHGIVHLPEQQLTSLRLGQEAQVFSNQQSKNAINAKVLRISPV 236

Query: 251 LDGQT-RLGIVYADIEPGSGARAGMYAKGNVVL-AQSPAVTVPAVSVVIRDGRSYVPKLS 308
           +D Q+    +  A     +  +AGM+ +  +        +TVP  +++ +D +  +  ++
Sbjct: 237 VDPQSGTFKVTLAVPNQDARLKAGMFTRVELKYDTHENVITVPYSALINQDNKQALYVIA 296

Query: 309 GADRVALQAVTVGRRQGDAVEIVSGIVPGDKVVVQGAAFLNDGDVVRVTPPTQAA 363
           G +    + V +G R+GDAVEIVSGI PG+ VV +G   L D  +V V  P   A
Sbjct: 297 GTN-ANRREVEIGYREGDAVEIVSGIKPGEVVVTRGQQNLKDQSLVEVITPLDLA 350