Pairwise Alignments

Query, 370 a.a., efflux RND transporter periplasmic adaptor subunit from Ralstonia solanacearum UW163

Subject, 360 a.a., HlyD family-related protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 82.4 bits (202), Expect = 2e-20
 Identities = 76/309 (24%), Positives = 145/309 (46%), Gaps = 12/309 (3%)

Query: 53  VTVAAASQTQWPATLEASGAIAPWQEAVIGAQVSGLRLADVRVNVGDQVKRGQILAVFD- 111
           V +AAA+  Q    +EA G    ++   I  +V+ + +  ++ + GD VK+G +L     
Sbjct: 37  VVIAAAAMAQVRDEVEAIGTNKAYESVTITPKVTDV-VTSLKFDDGDIVKKGDLLVQLQN 95

Query: 112 -ADLLRADEARLKAGWQQAEANRERALKLKGSGGISEQDVLQYVTQADVSKAQLRSTQLQ 170
              L +   A++K    Q E  R  +L    +    E+D LQ  T  D ++A+L   Q  
Sbjct: 96  AEQLAKVKVAQVKVSDNQRELARISSLVTSRTVAELERDRLQ--TLIDTTRAELEQAQSS 153

Query: 171 LRYAEVIAPDDGVISARSATVGTVSNTGQELFRMIRQSRLEWRGELTAAQLAQMKAGQRI 230
           L    ++AP +G +  R  +VG++   G E+  +   S+++    +    + +++ G+ +
Sbjct: 154 LNDRSIVAPFNGRLGLRQVSVGSLVTPGTEISTLDDISKIKLDFSVPERFIQELQPGKLV 213

Query: 231 R---LALPDGTAATAMVRQTAPSLDGQTRLGIVYADIEPGSGARA--GMYAKGNVVLAQS 285
               +A PD      ++   +  ++  TR  IV A+I P    R   GM  K  ++    
Sbjct: 214 EAKAVAFPDEIFKGKVISIDS-RVNPTTRAVIVRAEI-PNHDLRLLPGMLMKVKLIKRSR 271

Query: 286 PAVTVPAVSVVIRDGRSYVPKLSGADRVALQAVTVGRRQGDAVEIVSGIVPGDKVVVQGA 345
            A+ +P  +++      +V  ++  + +  + VT+G R    VEI  G+  G+ VV++G 
Sbjct: 272 EALMLPESAIIPIQKSHFVYSVNKDNVIERKQVTIGIRTRGWVEITDGLAIGENVVIRGL 331

Query: 346 AFLNDGDVV 354
             ++ GDVV
Sbjct: 332 LKVHPGDVV 340