Pairwise Alignments

Query, 885 a.a., DNA mismatch repair protein MutS from Ralstonia solanacearum UW163

Subject, 905 a.a., DNA mismatch repair protein MutS (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  570 bits (1469), Expect = e-166
 Identities = 371/901 (41%), Positives = 501/901 (55%), Gaps = 37/901 (4%)

Query: 17  PFDKHTPMMQQYLKLKSAHPHTLVFYRMGDFYELFFEDAEKAARLLDITLTSRGSTNGQP 76
           P  K TPM +QYL++K  +P  L+FYRMGDFYELFF+DAE  AR L I LT R       
Sbjct: 4   PSPKLTPMFEQYLRIKEDYPDALLFYRMGDFYELFFDDAETTARELQIALTCRNPNAELK 63

Query: 77  IRMAGVPFHAVEQYLAKLVKLGESAAICEQIGDPATTKGPVERKVVRVVTPGTLTDAALL 136
             M GVP+HAVE Y+++L+  G   AICEQI DP   KG V+R V RV+TPGT+ D A L
Sbjct: 64  APMCGVPYHAVEGYISQLLDKGYRVAICEQIEDPKEAKGLVKRAVTRVLTPGTVIDDANL 123

Query: 137 SDKVNNHLLAIAQIPGKRGAAPLVGLAWLNLVGGELR-LMECSADQLDRELERIRPAEVL 195
             K +N+L A+         A     AW+++  GE   L      +L +  +++ P E+L
Sbjct: 124 DAKEHNYLGALFWNQDAEAGA----FAWVDVSTGEWSGLYSRKLAELWQWAQKMAPRELL 179

Query: 196 SD---DATLSAIAYDVARTRLPDW-HFDVEAGARRLREQLGVASLVAFGAETLTAALAAA 251
                D    A        R+P   HFD+++G  R+    GVA L + G E     + A 
Sbjct: 180 LPEGVDTPAMATLGTTQTVRVPARSHFDLKSGTERVMRAQGVADLGSLGLEGKPELVRAC 239

Query: 252 GALLNYAAATQGQSLRHVIGLTVEHESEFIGLDTATRRNLELTETLRGQESP-TLFSLLD 310
            ALL Y A TQ Q L H+      +    + +D  T RNLEL   L G++ P TL+ +LD
Sbjct: 240 AALLAYLAQTQKQELSHLAPFKPLNLGRHLIIDEVTERNLELFHRLDGRKGPGTLWHILD 299

Query: 311 TCSTSMGSRLLRHWLHHPLRDRAVPQARQQAIEVLLAGDW--QSLRGTLRTLSDVERITG 368
              T MG RLL   +HHP R+ +  +  QQ +E L   D   ++LR  L  + D+ER++ 
Sbjct: 300 RTLTPMGGRLLEERMHHPWREASPIRETQQVVEWLFQDDVRREALRTALDLVYDLERLST 359

Query: 369 RLALLSARPRDLSSLRDTLARLPEVRDQLPQ---------------SDAAPL-LGDLHAA 412
           R+ L  A P+D  +LR +L+ LP VR  L +                D  P  L D+ +A
Sbjct: 360 RIFLNRATPKDFIALRQSLSALPAVRATLERPANPEGTYPTDAETSGDTLPKPLSDMLSA 419

Query: 413 LAIPEDAHALLQHAVMAEPAAMVRDGGVIARGYDADLDELRDISENCGQFLVDLEARERE 472
                D   LL+ A+   P  +V +GG+   G+D DLDEL D++E+    L +L A E+ 
Sbjct: 420 WDDLADYADLLRRALTDNPPHLVTEGGLFRPGFDPDLDELLDLAEHGEARLQELLAEEQT 479

Query: 473 RTGIANLRVEYNRVHGFYIEVTNGQAAKVPDDYRRRQTLKNAERYITPELKTFEDKALSA 532
            +G+  L++ YNRV G++ E++   A  VP+ + RRQTL NAER+ T  LK  E+K +SA
Sbjct: 480 VSGLPKLKLGYNRVFGYFFELSRAGADSVPEHFVRRQTLANAERFTTERLKELEEKLVSA 539

Query: 533 QDRALSREKSLYEDLLQKLLPHLPAFKRIAAALAQADVLATLAERAHALSWSCPALTDAP 592
            DR  + E  L++ L   +    P    +A  LA  D   +LA+ A    W  P +    
Sbjct: 540 TDRRKTLEYRLFQSLRDTVAEARPRVLFMADMLAHLDFWQSLADVARRNGWVRPDVHTGH 599

Query: 593 GIELIRARHPVVE--QQVEQFVANDCVLQETRKLLLITGPNMGGKSTFMRQTALVVLLAY 650
            I +   RHPVVE  Q    FV ND  + E R+LLLITGPNM GKST +RQTA++ LLA 
Sbjct: 600 DIVIREGRHPVVEAMQGSASFVPNDLRMDEKRRLLLITGPNMAGKSTVLRQTAIICLLAQ 659

Query: 651 VGAFVPADAATIGPIDRIFTRIGAADDLAGGRSTFMVEMTEAAAILHRATPNSLVLMDEI 710
           +GAFVPA  A+IG  DRIF+R+GA+D+LA G+STFMVEM E A IL +A+  SLV++DEI
Sbjct: 660 MGAFVPAREASIGIADRIFSRVGASDNLAQGQSTFMVEMMETARILRQASKRSLVILDEI 719

Query: 711 GRGTSTFDGLALAWAIARHLL--SHNRSHTLFATHYFELTQLPQEFAQASNVHLSAVEHG 768
           GRGTSTFDG+ALAWA+   L   +     TLFATHY E+T L        N++++  E  
Sbjct: 720 GRGTSTFDGMALAWAVVEELTRRAGGGIRTLFATHYHEITSLEGRIPGVHNMNIAIREWN 779

Query: 769 DGIVFLHAVQEGPASQSYGLQVAQLAGVPQPVIRAARKRLAWLEQ-HSADTGATPQLDLF 827
             IVFL  +  GPA +SYG++VA+LAGVP  V++ AR+ LA LE+   A  G        
Sbjct: 780 GDIVFLRRLVPGPADKSYGIEVARLAGVPHSVVQRARELLADLERTRDAARGTNSAPSRQ 839

Query: 828 ALPG--DPSDDDDDDATEAAAPAA--SSALTEALADIDPDAMTPREALDVLYRLKALSDT 883
            LPG   PS  +  D   A  P +     L  AL DID D MTP EAL  +   K L  T
Sbjct: 840 TLPGLDLPSKQEQVDTIVAPPPCSGVEHPLLVALRDIDTDDMTPLEALKRITEWKQLWGT 899

Query: 884 S 884
           +
Sbjct: 900 T 900