Pairwise Alignments

Query, 522 a.a., ABC transporter substrate-binding protein from Ralstonia solanacearum UW163

Subject, 520 a.a., oligopeptide/dipeptide ABC transporter, periplasmic oligopeptide/dipeptide-binding protein (TIGR) from Desulfovibrio vulgaris Hildenborough JW710

 Score =  205 bits (521), Expect = 4e-57
 Identities = 155/523 (29%), Positives = 241/523 (46%), Gaps = 43/523 (8%)

Query: 1   MKRLLAS-SLAIALLAAAG----AAGAQTLSIGFADPLSSLDPQLNNHAGDRSVDVHFWD 55
           MKRL+A  SLA+A + A G    AA  +T  I  A    SLDP +       +     +D
Sbjct: 1   MKRLIALLSLALAAMLALGGIANAAEGKTFRIAMASDPESLDPHMQLSGPILAYSHWVFD 60

Query: 56  LLVENKWN---KLQPGLALSWKPLDPKTWEFKLRPGVKWHDGKPFTADDVIFSYQRARSV 112
            LV  +W    K +P LA  W+ ++P T  F LR GVK+H G PFTA DV ++  R +  
Sbjct: 61  PLV--RWTPDMKFEPRLAEKWEQINPTTMRFHLRKGVKFHSGNPFTAKDVAWTLDRLKKS 118

Query: 113 PGSVATFAGYLRTVESVSAKDPLTLIVKTHIPNPDLPLNLAS--VHIVSK-HVGEKSATE 169
           P     F G           D  T+ + T  P   L +NLA+    + SK + G  +  +
Sbjct: 119 P----DFKGLFIKFAEPKVIDDNTIDIITTEPY-GLVMNLATYIFPMDSKFYTGTDAKGQ 173

Query: 170 DYN---------AGRAVVGTGPFKFVSYTPGDRVVMARNDAYWDGKSPWEKVNYRYINNA 220
             +         A     GTGP+       G ++++  N  YW  +   + +    I N 
Sbjct: 174 PKDAIVKSGYSFANDNASGTGPYSVAEREQGVKLILKANKGYWGKRGNVDTIELTPIKNE 233

Query: 221 AARTANLLSGEVDVIDKVSVADLARLRQSPSVKVYAYPGLRVMLLQPSFRPGPNEYLTGN 280
           A R A +L G+VD I  V V D  +L ++  V++   P  R++ +Q + +  P       
Sbjct: 234 ATRVAAILKGDVDFISPVPVQDYDQLSKNADVELITMPSARIITIQLNQKKFPQ------ 287

Query: 281 DGKPLPSNPLLDVRVRRALSLAIDRKAIVDRILQGAATAANQWMPADTFGYNPDVKDIPY 340
                      D RVR A+  A D   IV ++++G  T   Q  P    GY  D+K   Y
Sbjct: 288 ---------FADKRVREAIIAATDTAGIVAKVMKGYTTTTQQQAPKGFAGYIADLKP-RY 337

Query: 341 DPAQAKKLLAEAGFPQGFNLVMHVPNDRYPQGPETAQAVAQFWTRIGVKAKVEVVPWSVY 400
           +   AKKL+ +AGF +GF + M  PN+RY    + AQA      RI +K  ++ +P + Y
Sbjct: 338 NLDNAKKLMKDAGFEKGFEVSMIAPNNRYVNDEKIAQAFVSMMARINIKVNLKTMPKAQY 397

Query: 401 AGHANKNDYAMSMLAWGNGTGEASYALVNVLASVDTKKGLGASNWGHYSNQAVDHALDAS 460
               +     + M+ W   T + +     +L + +   G+G  N G+Y+N   D  +DA+
Sbjct: 398 WDQFDAQVADIQMIGWHPDTEDTANYSEYLLMTPNKDTGMGQYNSGNYANPKFDALIDAA 457

Query: 461 TEEFNTEKRAAILRHSVKLVSDDVGVLPLYHYQNVWAAKKGLK 503
             E +  KR A+L+ S ++  +D   +PL+     WAA+K +K
Sbjct: 458 NRETDPAKRDALLKESEQMAYNDAAFVPLHWEPLSWAARKTVK 500